View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11427_low_26 (Length: 239)
Name: NF11427_low_26
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11427_low_26 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 12844062 - 12844283
Alignment:
| Q |
18 |
aaaatgatgattgagcatactttggagccagtttgttacgacggaagcagtggcggtaacggtgacttcgaagttgatttggctttcatgaatgtagaca |
117 |
Q |
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| T |
12844062 |
aaaatgatgattgagcatactttggagccagtttgttacgacggaagctgtggcggtaacggtgacttcgaagttgatttggctttcatgaatgtagaca |
12844161 |
T |
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| Q |
118 |
tggtaagtgcgaaagttttcatatctgccacgacctagatcggtgaccgtgtaagccatgagaatgacggtgtaaagatttcttttctttggcgcgttcg |
217 |
Q |
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| T |
12844162 |
tggtaagtgcgaaggttttcatatctgccacgacctagatcggtgacggtgtaagccatgagaatgacggtgtaaagatttcttttctttggcgcgttcg |
12844261 |
T |
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| Q |
218 |
ttcttttctatcactgtaatca |
239 |
Q |
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| T |
12844262 |
ttcttttctatcactgtaatca |
12844283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 12861451 - 12861234
Alignment:
| Q |
22 |
tgatgattgagcatactttggagccagtttgttacgacggaagcagtggcggtaacggtgacttcgaagttgatttggctttcatgaatgtagacatggt |
121 |
Q |
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| T |
12861451 |
tgatgatcgagcatagtacggagccagtttgttacaacggaagcagtggcggtaacggtgacttcgaagttgatttggctttcgtgaatgtagacatggt |
12861352 |
T |
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| Q |
122 |
aagtgcgaaagttttcatatctgccacgacctagatcggtgaccgtgtaagccatgagaatgacggtgtaaagatttcttttctttggcgcgttcgttct |
221 |
Q |
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| T |
12861351 |
aagtgcgaaggttttcatatctgtcacgacctagatcggtgaccgtgtaagccatgagaatgacggtgtaaagatttcttttctttgtcgcgttcgttct |
12861252 |
T |
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| Q |
222 |
tttctatcactgtaatca |
239 |
Q |
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| T |
12861251 |
tttctatcactgtaatca |
12861234 |
T |
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