View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11427_low_28 (Length: 237)

Name: NF11427_low_28
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11427_low_28
NF11427_low_28
[»] chr5 (3 HSPs)
chr5 (18-224)||(32268461-32268666)
chr5 (17-221)||(41900418-41900621)
chr5 (36-145)||(41886552-41886661)
[»] chr4 (8 HSPs)
chr4 (31-148)||(7225101-7225218)
chr4 (35-147)||(553759-553871)
chr4 (31-145)||(661860-661974)
chr4 (16-149)||(1755551-1755686)
chr4 (103-149)||(3437632-3437678)
chr4 (49-150)||(642004-642105)
chr4 (41-150)||(21833227-21833336)
chr4 (31-68)||(53760233-53760270)
[»] chr8 (2 HSPs)
chr8 (35-147)||(17642879-17642991)
chr8 (182-224)||(27923101-27923143)
[»] chr3 (2 HSPs)
chr3 (31-146)||(51113137-51113252)
chr3 (31-147)||(51763330-51763446)
[»] chr1 (2 HSPs)
chr1 (89-169)||(7555176-7555256)
chr1 (35-146)||(9587262-9587373)
[»] chr6 (5 HSPs)
chr6 (31-134)||(9412137-9412237)
chr6 (83-145)||(6423907-6423969)
chr6 (112-149)||(8913441-8913478)
chr6 (103-147)||(6417092-6417136)
chr6 (83-143)||(19633104-19633164)
[»] chr7 (1 HSPs)
chr7 (103-147)||(10615713-10615757)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 32268666 - 32268461
Alignment:
Q  18 cttctctgtcaaatctc--gttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcaggctttttccaaaa 115  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |    
T  32268666 cttctctgtcaaatctctcgttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaaga 32268567  T
Q  116 agattacaactttaacctctctcacttgttccaaattgcaatatatcaatagcagcgatcatctattacttatcgctgattgtttccctttgttggaagt 215  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||   ||||  |||||||| || |||||||||| |||||||||||    
T  32268566 agattacaactttgacctctctcacttgttccaaaatgcaatatatcaatagcagcg---atcttgtacttatctctcattgtttccccttgttggaagt 32268470  T
Q  216 cctcgacct 224  Q
    ||| |||||    
T  32268469 cctagacct 32268461  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 41900418 - 41900621
Alignment:
Q  17 acttctctgtcaaatctcg--ttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcaggctttttccaaa 114  Q
    |||||| |||||||||||   |||||||||||||||||| |||||||| |||||| || || || |||| ||| || ||||||| |  ||||||||||||    
T  41900418 acttctttgtcaaatctctcattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaa 41900517  T
Q  115 aagattacaactttaacctctctcacttgttccaaattgcaatatatcaatagcagcgatcatctattacttatcgctgattgtttccctttgttggaag 214  Q
    |||||||||||||| |||||||||||||||| | || |||| ||||||||||||||||   |||| ||||||||| |||| |||||||||||||||||||    
T  41900518 aagattacaactttgacctctctcacttgttacgaaatgcattatatcaatagcagcg---atcttttacttatctctgactgtttccctttgttggaag 41900614  T
Q  215 tcctcga 221  Q
    | |||||    
T  41900615 ttctcga 41900621  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 41886552 - 41886661
Alignment:
Q  36 ttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcaggctttttccaaaaagattacaactttaacctct 135  Q
    |||||||||||||||||| ||||||||||| ||  |  || | || |||||||||| ||||||||  | |||| ||||||||||||||||||||||||||    
T  41886552 ttttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgcgagtttttgccaaaaagattacaactttaacctct 41886651  T
Q  136 ctcacttgtt 145  Q
    |||| |||||    
T  41886652 ctcatttgtt 41886661  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 7225101 - 7225218
Alignment:
Q  31 tctcgttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcaggctttttccaaaaagattacaactttaa 130  Q
    ||||||||||||||||||||||| ||||| ||| |||| || |||| |||||||||  ||  ||||||||| ||| ||||  |||| ||||||||||| |    
T  7225101 tctcgttttccattgaaactcacatcacttaatatctcgaataaatccatcattccagcacgtgggttgcaagctctttctcaaaatattacaactttga 7225200  T
Q  131 cctctctcacttgttcca 148  Q
    |||||||||| |||||||    
T  7225201 cctctctcacatgttcca 7225218  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 553871 - 553759
Alignment:
Q  35 gttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcaggctttttccaaaaagattacaactttaacctc 134  Q
    ||||||||||||| ||||| |||||| |||||||  | |||  || ||||||| ||| ||||||||  ||||| ||| |||| ||||||||||| |||||    
T  553871 gttttccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctc 553772  T
Q  135 tctcacttgttcc 147  Q
    |||||| ||||||    
T  553771 tctcacctgttcc 553759  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 661974 - 661860
Alignment:
Q  31 tctcgttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcaggctttttccaaaaagattacaactttaa 130  Q
    ||||||| ||| |||||| ||||||||||||||||||| ||| ||  || ||||||| | | ||| ||||  ||||| ||| || | |||||||||||||    
T  661974 tctcgttctccgttgaaaatcacgtcactcaatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaa 661875  T
Q  131 cctctctcacttgtt 145  Q
    ||||||||| |||||    
T  661874 cctctctcatttgtt 661860  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 1755686 - 1755551
Alignment:
Q  16 cacttctctgtcaaatctc--gttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcaggctttttccaa 113  Q
    |||||||||| ||||||||  |||| ||||||||||| || ||  | |||||||| ||| ||  |  ||||||||| |  |||||||| ||||| ||  |    
T  1755686 cacttctctgccaaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaaagggttgcaagctttctctca 1755587  T
Q  114 aaagattacaactttaacctctctcacttgttccaa 149  Q
    ||||||||||||||| ||||||||||| ||||||||    
T  1755586 aaagattacaactttgacctctctcacatgttccaa 1755551  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 3437632 - 3437678
Alignment:
Q  103 gctttttccaaaaagattacaactttaacctctctcacttgttccaa 149  Q
    ||||| ||| |||||||||||||||| |||||||||| |||||||||    
T  3437632 gctttctcccaaaagattacaactttgacctctctcagttgttccaa 3437678  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 642105 - 642004
Alignment:
Q  49 ctcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcaggctttttccaaaaagattacaactttaacctctctcacttgttcca 148  Q
    |||||||||||||||||||| |||  || || ||||||  | | |||||||||  |||| ||| | |||||| |||||||||| |||||||  |||||||    
T  642105 ctcacgtcactcaatctctccaaccgatccaccattcctgctaatgggttgcaatctttctcccagaagatttcaactttaacttctctcaaatgttcca 642006  T
Q  149 aa 150  Q
    ||    
T  642005 aa 642004  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 21833227 - 21833336
Alignment:
Q  41 cattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcaggctttttccaaaaagattacaactttaacctctctcac 140  Q
    |||||||  ||| |||||||||| |||| ||||||  || ||||||| ||  ||||||||  | |||| |  |||| ||||| ||||| |||||||||||    
T  21833227 cattgaacatcaagtcactcaatatctccaacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcac 21833326  T
Q  141 ttgttccaaa 150  Q
    ||||||||||    
T  21833327 ttgttccaaa 21833336  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 53760233 - 53760270
Alignment:
Q  31 tctcgttttccattgaaactcacgtcactcaatctctc 68  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  53760233 tctcgtttcccattgaaactcacatcactcaatctctc 53760270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 17642879 - 17642991
Alignment:
Q  35 gttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcaggctttttccaaaaagattacaactttaacctc 134  Q
    ||||||||||||||||||| |||||||||||||| ||| |   || ||||||||| | |||||| || ||||| ||| | || ||||||||||| |||||    
T  17642879 gttttccattgaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctc 17642978  T
Q  135 tctcacttgttcc 147  Q
    |||||||||||||    
T  17642979 tctcacttgttcc 17642991  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 27923143 - 27923101
Alignment:
Q  182 tacttatcgctgattgtttccctttgttggaagtcctcgacct 224  Q
    |||||||| || ||| |||||||||||||||||||||||||||    
T  27923143 tacttatctctcattatttccctttgttggaagtcctcgacct 27923101  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 51113137 - 51113252
Alignment:
Q  31 tctcgttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcaggctttttccaaaaagattacaactttaa 130  Q
    |||||||| ||||||||||| || ||||||||| |||| |||||| |||| |||||||||| ||| ||||  ||||| ||  |||| ||||||||| | |    
T  51113137 tctcgtttcccattgaaacttacttcactcaatatctccaacaaaagcattattcccacaaatggattgcgagctttctcggaaaatattacaactctga 51113236  T
Q  131 cctctctcacttgttc 146  Q
    ||||||||||||||||    
T  51113237 cctctctcacttgttc 51113252  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 51763330 - 51763446
Alignment:
Q  31 tctcgttttccattgaaactcacgtcactcaatctctc-aaacaaatgcatcattcccacaattgggttgcaggctttttccaaaaagattacaacttta 129  Q
    |||||||| |||||||||||||| ||||| |||||||| |||||  |  | | |||| |||| ||||||||  | ||||||  ||||||||||||||||     
T  51763330 tctcgtttcccattgaaactcacatcacttaatctctccaaacagctt-acctttcctacaaatgggttgcgagttttttcacaaaagattacaactttg 51763428  T
Q  130 acctctctcacttgttcc 147  Q
    || |||||||||||||||    
T  51763429 acatctctcacttgttcc 51763446  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 7555256 - 7555176
Alignment:
Q  89 caattgggttgcaggctttttccaaaaagattacaactttaacctctctcacttgttccaaattgcaatatatcaatagca 169  Q
    ||||||| ||||  ||||| ||| |||| ||||||||||||||||| ||||||||||||||| || | | |||||||||||    
T  7555256 caattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagca 7555176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 9587373 - 9587262
Alignment:
Q  35 gttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcaggctttttccaaaaagattacaactttaacctc 134  Q
    |||| |||||||||||||| || ||||||||||| |   ||| |  ||||||| ||||||||||||| ||||| |||  |||||||||||| || || ||    
T  9587373 gtttcccattgaaactcacatcgctcaatctctccagtcaatcctgcattcccgcaattgggttgcatgctttctccttaaagattacaacgttgacatc 9587274  T
Q  135 tctcacttgttc 146  Q
    ||||| ||||||    
T  9587273 tctcatttgttc 9587262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 9412237 - 9412137
Alignment:
Q  31 tctcgttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcaggctttttccaaaaagattacaactttaa 130  Q
    ||||||||||||||||||||| | ||||| |||||||| ||| |  ||| ||||||| |   ||||||||  ||||| ||| |||| |||||||||||||    
T  9412237 tctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaactttaa 9412141  T
Q  131 cctc 134  Q
    ||||    
T  9412140 cctc 9412137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 6423969 - 6423907
Alignment:
Q  83 ttcccacaattgggttgcaggctttttccaaaaagattacaactttaacctctctcacttgtt 145  Q
    ||||||||| ||||||||  ||||| ||| |||| || |||||||| ||||||||||||||||    
T  6423969 ttcccacaaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 8913441 - 8913478
Alignment:
Q  112 aaaaagattacaactttaacctctctcacttgttccaa 149  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  8913441 aaaaagattacaactttgacctctctcaattgttccaa 8913478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 6417136 - 6417092
Alignment:
Q  103 gctttttccaaaaagattacaactttaacctctctcacttgttcc 147  Q
    ||||| ||| |||||| ||||||||| ||||||||||||||||||    
T  6417136 gctttctcccaaaagaatacaactttgacctctctcacttgttcc 6417092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 19633164 - 19633104
Alignment:
Q  83 ttcccacaattgggttgcaggctttttccaaaaagattacaactttaacctctctcacttg 143  Q
    ||||||||| ||||||||  ||||| ||| |||  ||||||||||| ||||||||||||||    
T  19633164 ttcccacaaatgggttgcgagctttctccgaaagcattacaactttgacctctctcacttg 19633104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 10615757 - 10615713
Alignment:
Q  103 gctttttccaaaaagattacaactttaacctctctcacttgttcc 147  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||||    
T  10615757 gctttctcccaaaagattacaactttgacctctctcacttgttcc 10615713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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