View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11427_low_29 (Length: 214)

Name: NF11427_low_29
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11427_low_29
NF11427_low_29
[»] chr6 (62 HSPs)
chr6 (13-198)||(25579729-25579914)
chr6 (13-198)||(26142875-26143060)
chr6 (13-198)||(26055936-26056121)
chr6 (13-198)||(26075906-26076091)
chr6 (13-193)||(25538550-25538730)
chr6 (13-198)||(26048855-26049040)
chr6 (13-198)||(26070024-26070209)
chr6 (13-191)||(25481752-25481930)
chr6 (13-198)||(26655999-26656184)
chr6 (13-198)||(26761970-26762155)
chr6 (13-194)||(27338061-27338242)
chr6 (13-194)||(27398801-27398982)
chr6 (13-191)||(27678956-27679134)
chr6 (15-191)||(27677613-27677789)
chr6 (18-149)||(26884178-26884311)
chr6 (15-149)||(27706443-27706577)
chr6 (13-198)||(26646489-26646674)
chr6 (13-198)||(26752457-26752642)
chr6 (13-149)||(27698535-27698671)
chr6 (18-198)||(26622991-26623171)
chr6 (18-198)||(26728969-26729149)
chr6 (13-149)||(27611043-27611179)
chr6 (13-149)||(27718420-27718556)
chr6 (16-149)||(27593061-27593194)
chr6 (13-149)||(27724886-27725022)
chr6 (48-191)||(27427605-27427748)
chr6 (13-118)||(27229242-27229347)
chr6 (13-154)||(27531233-27531374)
chr6 (18-179)||(28149953-28150113)
chr6 (19-188)||(28242820-28242989)
chr6 (15-135)||(31284300-31284420)
chr6 (13-193)||(27604702-27604882)
chr6 (13-148)||(28781149-28781284)
chr6 (13-191)||(26802452-26802630)
chr6 (13-194)||(28234574-28234754)
chr6 (18-194)||(28181129-28181305)
chr6 (42-132)||(26823879-26823969)
chr6 (15-193)||(28226962-28227140)
chr6 (18-194)||(28185381-28185557)
chr6 (19-150)||(26341974-26342105)
chr6 (13-148)||(28786288-28786423)
chr6 (13-148)||(28792409-28792544)
chr6 (18-193)||(28297710-28297885)
chr6 (18-193)||(28514188-28514363)
chr6 (13-148)||(26937104-26937239)
chr6 (25-196)||(28139563-28139734)
chr6 (18-138)||(28325496-28325616)
chr6 (20-194)||(28098365-28098539)
chr6 (15-137)||(26861628-26861750)
chr6 (84-132)||(2184369-2184417)
chr6 (13-121)||(25506978-25507086)
chr6 (85-133)||(26975134-26975182)
chr6 (85-152)||(25071741-25071808)
chr6 (85-149)||(2184980-2185044)
chr6 (84-143)||(26848741-26848800)
chr6 (84-143)||(27214498-27214557)
chr6 (84-143)||(27234671-27234730)
chr6 (87-135)||(26949745-26949793)
chr6 (84-138)||(27665169-27665223)
chr6 (87-138)||(26635774-26635825)
chr6 (87-138)||(26741740-26741791)
chr6 (87-133)||(26959250-26959296)
[»] chr1 (3 HSPs)
chr1 (19-191)||(28127665-28127837)
chr1 (15-198)||(268336-268519)
chr1 (13-166)||(28164373-28164526)
[»] scaffold0349 (2 HSPs)
scaffold0349 (13-149)||(3462-3599)
scaffold0349 (13-149)||(14397-14532)
[»] scaffold0003 (1 HSPs)
scaffold0003 (48-191)||(59615-59758)
[»] chr4 (8 HSPs)
chr4 (48-191)||(18073807-18073950)
chr4 (15-197)||(18679547-18679729)
chr4 (15-198)||(18655456-18655639)
chr4 (15-198)||(18731483-18731666)
chr4 (48-142)||(17989088-17989182)
chr4 (15-148)||(18699429-18699562)
chr4 (15-198)||(18724064-18724247)
chr4 (19-193)||(5090951-5091125)
[»] scaffold0038 (4 HSPs)
scaffold0038 (19-188)||(42982-43151)
scaffold0038 (13-194)||(34735-34916)
scaffold0038 (15-193)||(27460-27638)
scaffold0038 (18-138)||(116811-116931)
[»] chr8 (1 HSPs)
chr8 (15-149)||(29273811-29273945)
[»] scaffold0277 (2 HSPs)
scaffold0277 (13-149)||(4712-4848)
scaffold0277 (13-148)||(13674-13809)
[»] chr2 (2 HSPs)
chr2 (15-138)||(3279700-3279823)
chr2 (85-138)||(17993736-17993789)
[»] scaffold0419 (1 HSPs)
scaffold0419 (13-146)||(7535-7668)
[»] scaffold0019 (1 HSPs)
scaffold0019 (18-138)||(58334-58454)
[»] scaffold1254 (1 HSPs)
scaffold1254 (13-70)||(37-94)
[»] chr5 (1 HSPs)
chr5 (19-131)||(16689027-16689139)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 3e-96; HSPs: 62)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 25579729 - 25579914
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25579729 gagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 25579828  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacatac 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25579829 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccgttttctatgatgtggaacctactcacatac 25579914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 26142875 - 26143060
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26142875 gagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 26142974  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacatac 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  26142975 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtatttcccgttttctatgatgtggaacctactcacatac 26143060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 26055936 - 26056121
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26055936 gagatgaaatcacatcatcacttgtcaaggccatcgaagaatctgggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 26056035  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacatac 198  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26056036 cgaacttgtccacatcattcactgctacaacacaaagagttgcttagtattgcccgttttctatgatgtggaacctactcacatac 26056121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 26075906 - 26076091
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26075906 gagatgaaatcacatcatcacttgtcaaggccatcgaagaatctgggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 26076005  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacatac 198  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26076006 cgaacttgtccacatcattcactgctacaacacaaagagttgcttagtattgcccgttttctatgatgtggaacctactcacatac 26076091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 25538550 - 25538730
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25538550 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctagaatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 25538649  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactca 193  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25538650 cgaacttgtccagatcattcactgctacaagacaaagagttgcttagtattgcccgttttctatgatgtggaacctactca 25538730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 26048855 - 26049040
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26048855 gagatgaaatcacacccaaacttgtcaaggccatggaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 26048954  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacatac 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  26048955 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccgttttttatgatgtggaacctactcacatac 26049040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 26070024 - 26070209
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26070024 gagatgaaatcacacccaaacttgtcaaggccatggaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 26070123  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacatac 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  26070124 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccgttttttatgatgtggaacctactcacatac 26070209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 25481752 - 25481930
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25481752 gagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttgtattcccatattttctgccaactatgcatcttcttcattttgtttgga 25481851  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctact 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| ||||||    
T  25481852 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattacccgttttctatggtgtggatcctact 25481930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 26655999 - 26656184
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    |||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26655999 gagatgaaatcacaccatcactcgttaaggccattgaagaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 26656098  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacatac 198  Q
    ||||||||||||||||||||| ||||| ||||||||| |||| |  || |||||  ||||||||| |||||| |||||||||||||    
T  26656099 cgaacttgtccacatcattcattgctataagacaaagggttgttcggttttgcctgttttctatggtgtggatcctactcacatac 26656184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 26761970 - 26762155
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    |||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26761970 gagatgaaatcacaccatcactcgttaaggccattgaagaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 26762069  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacatac 198  Q
    ||||||||||||||||||||| ||||| ||||||||| |||| |  || |||||  ||||||||| |||||| |||||||||||||    
T  26762070 cgaacttgtccacatcattcattgctataagacaaagggttgttcggttttgcctgttttctatggtgtggatcctactcacatac 26762155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 27338242 - 27338061
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  27338242 gagatgaaagcacaccatcacttgtcaaggccattgaagagtctaggattttgattcccatattttctgcaaactatgcatcttcttcattttgcttgga 27338143  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcac 194  Q
    ||||||||||||||||||||||||||||||||||| | |||| |  || |||||  ||||||||| || ||| |||||||||    
T  27338142 cgaacttgtccacatcattcactgctacaagacaaggggttgttcggttttgcctgttttctatggtgcggatcctactcac 27338061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 27398982 - 27398801
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  27398982 gagatgaaagcacaccatcacttgtcaaggccattgaagagtctaggattttgattcccatattttctgcaaactatgcatcttcttcattttgcttgga 27398883  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcac 194  Q
    ||||||||||||||||||||||||||||||||||| | |||| |  || |||||  ||||||||| || ||| |||||||||    
T  27398882 cgaacttgtccacatcattcactgctacaagacaaggggttgttcggttttgcctgttttctatggtgcggatcctactcac 27398801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 27678956 - 27679134
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||  | ||||||  ||||||||| ||||||||||||||||||||    
T  27678956 gagatgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcattttgtttgga 27679055  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctact 191  Q
    ||||||||||||||||||||||||||||||||||||| || || | ||  ||||  |||||| || |||||||||||||    
T  27679056 cgaacttgtccacatcattcactgctacaagacaaagggtcgcctcgttctgcctgttttctttggtgtggaacctact 27679134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 27677789 - 27677613
Alignment:
Q  15 gatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacg 114  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| |  | ||||||  ||||||||| ||||||||||||||||||||||    
T  27677789 gatgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttattgctgtgttttctatcaactatgcctcttcttcattttgtttggacg 27677690  T
Q  115 aacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctact 191  Q
    ||||||||||||||||||||||||||||||||||| || || | ||  ||||  |||||| || |||||||||||||    
T  27677689 aacttgtccacatcattcactgctacaagacaaagggtcgcctcgttctgcctgttttctttgctgtggaacctact 27677613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 26884178 - 26884311
Alignment:
Q  18 gaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaac 117  Q
    |||||||||||||||||  |||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  26884178 gaaatcacaccatcactcatcaaggccattgaagaatctagaatttttattccaatattttctaccaactatgcatcttcttcattttgtttggacgaac 26884277  T
Q  118 ttgtccaca--tcattcactgctacaagacaaag 149  Q
    |||||||||  |||||||||||||| ||||||||    
T  26884278 ttgtccacatgtcattcactgctacgagacaaag 26884311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 27706577 - 27706443
Alignment:
Q  15 gatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacg 114  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||  | ||||||  || |||||| ||||||||||||||||||||||    
T  27706577 gatgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcacctatgcctcttcttcattttgtttggacg 27706478  T
Q  115 aacttgtccacatcattcactgctacaagacaaag 149  Q
    |||||||||||||||||||||||||||||||||||    
T  27706477 aacttgtccacatcattcactgctacaagacaaag 27706443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 26646489 - 26646674
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||  | ||||||  ||||||||| ||||||  ||||||||||||    
T  26646489 gagatgaaatcacaccatcactcatcaaggccattgaagaatctaggatttttattcctgtgttttctatcaactatgcctcttctaaattttgtttgga 26646588  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacatac 198  Q
    ||||||||||||||||||||| ||||||||||||||| || |  | || |||||| |||||||||  ||||| |||||||| ||||    
T  26646589 cgaacttgtccacatcattcattgctacaagacaaagggtcgtctcgttttgcccgttttctatggcgtggatcctactcagatac 26646674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 26752457 - 26752642
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||  | ||||||  ||||||||| ||||||  ||||||||||||    
T  26752457 gagatgaaatcacaccatcactcatcaaggccattgaagaatctaggatttttattcctgtgttttctatcaactatgcctcttctaaattttgtttgga 26752556  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacatac 198  Q
    ||||||||||||||||||||| ||||||||||||||| || |  | || |||||| |||||||||  ||||| |||||||| ||||    
T  26752557 cgaacttgtccacatcattcattgctacaagacaaagggtcgtctcgttttgcccgttttctatggcgtggatcctactcagatac 26752642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 27698671 - 27698535
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||||||||  |||||||||| || ||||||||||||||||||||  | ||||||  ||||||||||||||||||||||||||||||    
T  27698671 gagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctctcaactatgcatcttcttcattttgtttgga 27698572  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaag 149  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  27698571 cgaacttgtccacataattcactgctacgagacaaag 27698535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 26622991 - 26623171
Alignment:
Q  18 gaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaac 117  Q
    ||||||| ||||||||||| ||| || |||||||| |||||||||||||||||  | |||||| |||||||||||| |||||||||||||||||| ||||    
T  26622991 gaaatcaaaccatcacttgacaatgctatcgaagagtctaggatttttattcctgtgttttctcccaactatgcatattcttcattttgtttggatgaac 26623090  T
Q  118 ttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacatac 198  Q
    ||||||||||||||||||||||||| |||||| || |  | || |||||| | |||||||  ||||| |||||||||||||    
T  26623091 ttgtccacatcattcactgctacaaaacaaagggtcgtctcgttttgcccgtcttctatggcgtggatcctactcacatac 26623171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 26728969 - 26729149
Alignment:
Q  18 gaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaac 117  Q
    ||||||| ||||||||||| ||| || |||||||| |||||||||||||||||  | |||||| |||||||||||| |||||||||||||||||| ||||    
T  26728969 gaaatcaaaccatcacttgacaatgctatcgaagagtctaggatttttattcctgtgttttctcccaactatgcatattcttcattttgtttggatgaac 26729068  T
Q  118 ttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacatac 198  Q
    ||||||||||||||||||||||||| |||||| || |  | || |||||| | |||||||  ||||| |||||||||||||    
T  26729069 ttgtccacatcattcactgctacaaaacaaagggtcgtctcgttttgcccgtcttctatggcgtggatcctactcacatac 26729149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 27611179 - 27611043
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||||||||  |||||||||| || ||||||||||||||||||||  | ||||||  ||||||||| |||||||| |||||||||||    
T  27611179 gagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttgga 27611080  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaag 149  Q
    ||||||||||||||| |||||||||||||||||||||    
T  27611079 cgaacttgtccacataattcactgctacaagacaaag 27611043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 27718556 - 27718420
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||||||||  |||||||||| || ||||||||||||||||||||  | ||||||  ||||||||| |||||||| |||||||||||    
T  27718556 gagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttgga 27718457  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaag 149  Q
    ||||||||||||||| |||||||||||||||||||||    
T  27718456 cgaacttgtccacataattcactgctacaagacaaag 27718420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 27593194 - 27593061
Alignment:
Q  16 atgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacga 115  Q
    |||||||||||||||||||| |||||||||| ||||| |||||||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||||||    
T  27593194 atgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacga 27593095  T
Q  116 acttgtccacatcattcactgctacaagacaaag 149  Q
    ||||| |||||||||||| |||||||||||||||    
T  27593094 acttgaccacatcattcattgctacaagacaaag 27593061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 27725022 - 27724886
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||||||||  |||||||||| || ||||||||||||||||||||  | ||||||  ||||||||| | |||||| |||||||||||    
T  27725022 gagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcctattcttcgttttgtttgga 27724923  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaag 149  Q
    ||||||||||||||| |||||||||||||||||||||    
T  27724922 cgaacttgtccacataattcactgctacaagacaaag 27724886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 48 - 191
Target Start/End: Complemental strand, 27427748 - 27427605
Alignment:
Q  48 gaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaa 147  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||| || |    
T  27427748 gaagaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaacca 27427649  T
Q  148 agagttgcttagtattgcccattttctatgatgtggaacctact 191  Q
    || ||||| | || |||||  |||||| || |||||||||||||    
T  27427648 agggttgcctcgttttgcctgttttctttggtgtggaacctact 27427605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 27229242 - 27229347
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    |||| ||||||||||||||||| ||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27229242 gagacgaaatcacaccatcactcgtcaaggccattgacgaatctcggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgaa 27229341  T
Q  113 cgaact 118  Q
    ||||||    
T  27229342 cgaact 27229347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 27531374 - 27531233
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||||||||    || ||||| ||| |||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||    
T  27531374 gagatgaaatcacaccatcactaaaaaatgccattgaaaaatctaggatttttattcccgtattttctgaaaactatgcatcttcttcattttgtttgga 27531275  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttg 154  Q
    ||||||||| ||||||| ||| |||||| | |||||| ||||    
T  27531274 cgaacttgttcacatcactcattgctacgatacaaagggttg 27531233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 28149953 - 28150113
Alignment:
Q  18 gaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaac 117  Q
    |||||||||||||||||  |||||||||| ||||| || |||||||| ||||| || || |||  ||||||| | |||||||||||||||||||||||||    
T  28149953 gaaatcacaccatcactc-tcaaggccattgaagagtccaggattttcattccaatcttctctatcaactatacttcttcttcattttgtttggacgaac 28150051  T
Q  118 ttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgat 179  Q
    |||||||||| |||||||||| |||| ||||| ||||||||||  |||| ||||||||||||    
T  28150052 ttgtccacattattcactgcttcaaggcaaagggttgcttagttctgcctattttctatgat 28150113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 28242820 - 28242989
Alignment:
Q  19 aaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaact 118  Q
    |||| |||||||||||| |||||||||| ||||| ||||||||||| |||||  | || |||  ||| ||||| |||||||||||||| |||||||||||    
T  28242820 aaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaact 28242919  T
Q  119 tgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacct 188  Q
    |||||||||||||||||||| ||||| |||  |  || |||| ||||| |||||||||||||||||||||    
T  28242920 tgtccacatcattcactgctgcaagaaaaatggacgcctagttttgccaattttctatgatgtggaacct 28242989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 31284300 - 31284420
Alignment:
Q  15 gatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacg 114  Q
    |||||||||||||||||||| | ||| ||||| ||||| |||||||||||||| ||| | ||||||||||||||||| ||||| || |||||||||||||    
T  31284300 gatgaaatcacaccatcactcgacaatgccattgaagagtctaggatttttatccccgtgttttctgccaactatgcctcttcgtcgttttgtttggacg 31284399  T
Q  115 aacttgtccacatcattcact 135  Q
    |||||||||||||||||||||    
T  31284400 aacttgtccacatcattcact 31284420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 27604882 - 27604702
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||| ||||| |||||||||| || ||||| ||||||||||||||  | ||||||  ||| ||||| |||||||| |||||||||||    
T  27604882 gagatgaaatcacaccagcacttctcaaggccattgatgaatccaggatttttattcctgtgttttctatcaaatatgcctcttcttccttttgtttgga 27604783  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactca 193  Q
     |||||||| ||||||||||| ||||||| ||||||| || || | || |||||  |||||| || |||||||||| ||||    
T  27604782 tgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcgttttgcctgttttctttggtgtggaaccttctca 27604702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 28781149 - 28781284
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  | ||||||  |||||||||  ||||   |||||| |||||    
T  28781149 gagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactatgccacttcaaaattttgcttgga 28781248  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaa 148  Q
    ||||||||| ||||| ||||| ||||||||||||||    
T  28781249 cgaacttgttcacattattcattgctacaagacaaa 28781284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 26802452 - 26802630
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||| |||||||||||  | ||||||  ||||||||| |||||   |||||| |||||    
T  26802452 gagatgaaatcacaccatcactcatcaaggccattgaagaatctagaatttttattcctgtgttttctatcaactatgcctcttcaaaattttgcttgga 26802551  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctact 191  Q
    ||||||||| ||||| ||||| ||||| ||||||||| || || | || ||||| ||||||| || |||||| ||||||    
T  26802552 cgaacttgttcacattattcattgctataagacaaagggtcgcctcgtcttgcctattttctttggtgtggatcctact 26802630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 28234574 - 28234754
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    |||||||||| |||||||||||| |||||||||| ||||| ||||||||||| |||||  | || |||  ||| ||||| |||||||||||||| |||||    
T  28234574 gagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttgga 28234673  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcac 194  Q
    ||||||||||||||||||| | |||| | ||  ||| ||  || |||| ||||| ||||||||||||||||||||| |||||    
T  28234674 cgaacttgtccacatcattta-tgcttcgaggaaaatagacgcctagttttgccaattttctatgatgtggaaccttctcac 28234754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 28181129 - 28181305
Alignment:
Q  18 gaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaac 117  Q
    ||||| ||| |||||||| |||||||||| ||||| ||||||||||| |||||| | || |||  ||| ||||| |||||||||||||| ||||||||||    
T  28181129 gaaataacatcatcacttttcaaggccattgaagagtctaggattttcattcccgtcttgtctatcaattatgcttcttcttcattttgcttggacgaac 28181228  T
Q  118 ttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcac 194  Q
    ||||||||||||||||||||| ||||  ||   |  |  |||| ||||| ||||||||||||||||||||| |||||    
T  28181229 ttgtccacatcattcactgcttcaaggaaagcgggcgtctagttttgccaattttctatgatgtggaaccttctcac 28181305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 26823879 - 26823969
Alignment:
Q  42 gccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattc 132  Q
    ||||| ||||| |||||||||||||||||  | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26823879 gccattgaagagtctaggatttttattcctgtgttttctgccaactatgcctcttcttcattttgtttggacgaacttgtccacatcattc 26823969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 28226962 - 28227140
Alignment:
Q  15 gatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacg 114  Q
    |||||||| ||| |||||||| |||||| ||| ||||||||||||||||| |||||  | || |||  ||| ||||| |||||||||||||| |||||||    
T  28226962 gatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacg 28227061  T
Q  115 aacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactca 193  Q
    ||||||||||||||||||| |||| ||||  |||  |  || | || ||||| ||||||||||||||||||||| ||||    
T  28227062 aacttgtccacatcattcattgcttcaaggaaaatcggcgccttgttttgccaattttctatgatgtggaaccttctca 28227140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 28185381 - 28185557
Alignment:
Q  18 gaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaac 117  Q
    ||||| ||| |||||||| |||||||||| ||||| ||||||||||| |||||| | || |||  ||| ||||| |||||||||||||| ||||||||||    
T  28185381 gaaataacatcatcacttttcaaggccattgaagagtctaggattttcattcccgtcttgtctatcaattatgcttcttcttcattttgcttggacgaac 28185480  T
Q  118 ttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcac 194  Q
    |||||||||||||| |||||| ||||  ||   |  |  |||| ||||| ||||||||||||||||||||| |||||    
T  28185481 ttgtccacatcattaactgcttcaaggaaagcgggcgtctagttttgccaattttctatgatgtggaaccttctcac 28185557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 26342105 - 26341974
Alignment:
Q  19 aaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaact 118  Q
    ||||||||| |||||||||||| ||||| ||||| || |||||||| ||||| || || ||   ||||||||| |||||||| |||||||||||||||||    
T  26342105 aaatcacacaatcacttgtcaaagccattgaagagtccaggattttcattccaattttctcaatcaactatgcttcttcttcgttttgtttggacgaact 26342006  T
Q  119 tgtccacatcattcactgctacaagacaaaga 150  Q
    ||||||||||||||| |||| |||| ||||||    
T  26342005 tgtccacatcattcattgcttcaaggcaaaga 26341974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 28786288 - 28786423
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  | ||||||  |||||| ||  | ||   |||||| |||||    
T  28786288 gagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacatcaaaattttgcttgga 28786387  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaa 148  Q
    ||||||||| ||||| ||||| ||||||||||||||    
T  28786388 cgaacttgttcacattattcattgctacaagacaaa 28786423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 28792409 - 28792544
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  | ||||||  |||||| ||  | ||   |||||| |||||    
T  28792409 gagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacatcaaaattttgcttgga 28792508  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaa 148  Q
    ||||||||| ||||| ||||| ||||||||||||||    
T  28792509 cgaacttgttcacattattcattgctacaagacaaa 28792544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 28297885 - 28297710
Alignment:
Q  18 gaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaac 117  Q
    ||||| |||||||||||| |||||  ||| |||||  |||||||||| |||||  | || ||| |||| ||||| |||||||||||||| ||||||||||    
T  28297885 gaaataacaccatcacttttcaagcacattgaagagactaggattttcattcctgtcttatctaccaattatgcttcttcttcattttgcttggacgaac 28297786  T
Q  118 ttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactca 193  Q
    ||||||||||||||||||||| ||||  ||  ||  |  |||| ||||| ||||| ||||||||||||||| ||||    
T  28297785 ttgtccacatcattcactgcttcaaggaaagtagccgtctagttttgccgattttttatgatgtggaaccttctca 28297710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 28514188 - 28514363
Alignment:
Q  18 gaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaac 117  Q
    ||||| |||||||||||| |||||  ||| |||||  |||||||||| |||||  | || ||| |||| ||||| |||||||||||||| ||||||||||    
T  28514188 gaaataacaccatcacttttcaagcacattgaagagactaggattttcattcctgtcttatctaccaattatgcttcttcttcattttgcttggacgaac 28514287  T
Q  118 ttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactca 193  Q
    ||||||||||||||||||||| ||||  ||  ||  |  |||| ||||| ||||| ||||||||||||||| ||||    
T  28514288 ttgtccacatcattcactgcttcaaggaaagtagccgtctagttttgccgattttttatgatgtggaaccttctca 28514363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 26937104 - 26937239
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    |||| |||||||||||||||||||||||||| || ||||| ||  |||||   || ||  |||| |||  |||||||||  |||||||||||||||||||    
T  26937104 gagaagaaatcacaccatcacttgtcaaggcaattgaagattccgggattgccatacctgtattctctatcaactatgccacttcttcattttgtttgga 26937203  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaa 148  Q
    |||||||||||||||| || |||||| |||||||||    
T  26937204 cgaacttgtccacatcgttgactgcttcaagacaaa 26937239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 28139563 - 28139734
Alignment:
Q  25 caccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtcca 124  Q
    |||| ||||| || || ||||| ||||||||||||||||| || ||  | |||||   ||||||||| |||||||| ||||| |||||||||||||||||    
T  28139563 caccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttcttcgttttgcttggacgaacttgtcca 28139662  T
Q  125 catcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacat 196  Q
    ||||||| |||||| ||| |||||| | || || || |||||  ||||||||| |||||| ||| |||||||    
T  28139663 catcattgactgcttcaacacaaagggatgtttggttttgcctgttttctatggtgtggatccttctcacat 28139734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 28325496 - 28325616
Alignment:
Q  18 gaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaac 117  Q
    ||||| ||||| |||||| |||||||||| ||||| ||||||||||| ||||| || || |||  ||| ||||| |||||||| ||||| ||||| ||||    
T  28325496 gaaataacaccgtcacttttcaaggccattgaagagtctaggattttcattcctattttgtctatcaattatgcttcttcttccttttgcttggatgaac 28325595  T
Q  118 ttgtccacatcattcactgct 138  Q
    |||||||||| ||||||||||    
T  28325596 ttgtccacattattcactgct 28325616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 28098539 - 28098365
Alignment:
Q  20 aatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaactt 119  Q
    |||||||| ||| |||||||||||||||||||| || |||||||| |||||  | || |||   |||||||| |||||||  ||||||||||| ||||||    
T  28098539 aatcacacaatcccttgtcaaggccatcgaagagtccaggattttaattccggtcttctctaagaactatgcttcttctttgttttgtttggatgaactt 28098440  T
Q  120 gtccacatcattcactgctac-aagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcac 194  Q
    ||||||||||||||| | ||| |||| |||| ||||||| || || || ||||| | ||| ||||||||| |||||    
T  28098439 gtccacatcattcaccgttacgaaga-aaagggttgcttcgtttttcctattttttgtgacgtggaaccttctcac 28098365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 26861628 - 26861750
Alignment:
Q  15 gatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacg 114  Q
    |||||||||| |  |||||| | ||| ||||| ||||| ||||| ||||| |||||  | ||||||||||||||||| ||||| |||||||||||||| |    
T  26861628 gatgaaatcaaaagatcactcgacaatgccattgaagagtctagaattttcattcctgtgttttctgccaactatgcctcttcgtcattttgtttggatg 26861727  T
Q  115 aacttgtccacatcattcactgc 137  Q
    |||||||||| |||||| |||||    
T  26861728 aacttgtccaaatcattaactgc 26861750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 2184369 - 2184417
Alignment:
Q  84 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattc 132  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2184369 aactatgcttcttcttcattttgtttggacgaacttgtccacatcattc 2184417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 25507086 - 25506978
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    |||||||||||||||||||| | ||||  ||||| |||||||||||||||||||||||  |  |||||  ||||||||| |||||   ||||||||||||    
T  25507086 gagatgaaatcacaccatcagtcgtcatcgccattgaagaatctaggatttttattccggttctttctatcaactatgcctcttcaaaattttgtttgga 25506987  T
Q  113 cgaacttgt 121  Q
     ||||||||    
T  25506986 ggaacttgt 25506978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 26975134 - 26975182
Alignment:
Q  85 actatgcatcttcttcattttgtttggacgaacttgtccacatcattca 133  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26975134 actatgcttcttcttcattttgtttggacgaacttgtccacatcattca 26975182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 25071741 - 25071808
Alignment:
Q  85 actatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagagt 152  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||| || ||||  |||||||    
T  25071741 actatgcttcttcttcattttgtttagacgaacttgtccacatcattcactacttcaaggaaaagagt 25071808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 2184980 - 2185044
Alignment:
Q  85 actatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 149  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||  |||| |||| |||||    
T  2184980 actatgcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaag 2185044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 26848741 - 26848800
Alignment:
Q  84 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 143  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||||||| |||| ||||    
T  26848741 aactatgccacttcttcgttttgtttggacgaacttgtccacatcattcattgctccaag 26848800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 27214498 - 27214557
Alignment:
Q  84 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 143  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  27214498 aactatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaag 27214557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 27234730 - 27234671
Alignment:
Q  84 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 143  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  27234730 aactatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaag 27234671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 26949745 - 26949793
Alignment:
Q  87 tatgcatcttcttcattttgtttggacgaacttgtccacatcattcact 135  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  26949745 tatgcttcttcttcattttgtttagacgaacttgtccatatcattcact 26949793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 27665223 - 27665169
Alignment:
Q  84 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 138  Q
    ||||||||  |||||||||||||||| || |||||||||||||||||||| ||||    
T  27665223 aactatgctacttcttcattttgtttagatgaacttgtccacatcattcattgct 27665169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 26635774 - 26635825
Alignment:
Q  87 tatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 138  Q
    ||||| |||||||  ||||||||||| |||||||||||||||||||| ||||    
T  26635774 tatgcttcttctttgttttgtttggatgaacttgtccacatcattcattgct 26635825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 26741740 - 26741791
Alignment:
Q  87 tatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 138  Q
    ||||| |||||||  ||||||||||| |||||||||||||||||||| ||||    
T  26741740 tatgcttcttctttgttttgtttggatgaacttgtccacatcattcattgct 26741791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 26959250 - 26959296
Alignment:
Q  87 tatgcatcttcttcattttgtttggacgaacttgtccacatcattca 133  Q
    ||||| |||||||| |||| |||||| ||||||||||||||||||||    
T  26959250 tatgcttcttcttcgttttatttggatgaacttgtccacatcattca 26959296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 28127837 - 28127665
Alignment:
Q  19 aaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaact 118  Q
    |||||||||| |||||| | |||||||| ||||||||||| |||||||||||  |||||||| |||||||||| ||||||||||||||||||||||||||    
T  28127837 aaatcacaccgtcacttttaaaggccattgaagaatctagaatttttattcctgtattttctaccaactatgcctcttcttcattttgtttggacgaact 28127738  T
Q  119 tgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctact 191  Q
    ||| ||||||||||||||||||||||||||| || || |||| |||||  |||||| ||  ||||| ||||||    
T  28127737 tgtgcacatcattcactgctacaagacaaagggtcgcctagttttgcctgttttctttggcgtggatcctact 28127665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 268519 - 268336
Alignment:
Q  15 gatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacg 114  Q
    |||||||||| ||||||||| | ||| ||||| ||||| |||||||||||||||||  | ||||||  ||||||||| ||||||||||||||||||||||    
T  268519 gatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacg 268420  T
Q  115 aacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacatac 198  Q
    |||||||||||||||||||||||||||||| |||| || |  |  | |||||| | |||||||  ||||| |||||||||||||    
T  268419 aacttgtccacatcattcactgctacaagaaaaagggtcgtctcattttgcccgtcttctatggcgtggatcctactcacatac 268336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 28164526 - 28164373
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    |||| ||||||||||| ||| |  |||||||||| ||| ||||| | |||||||||||  | || |||  ||||||||| ||||||||||||||||||||    
T  28164526 gagaagaaatcacaccgtcattcatcaaggccattgaaaaatcttgaatttttattcctgtgttatctatcaactatgcctcttcttcattttgtttgga 28164427  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcc 166  Q
    ||||||||||||||||||||||||||||||||||||| || || |||| |||||    
T  28164426 cgaacttgtccacatcattcactgctacaagacaaagggtcgcctagttttgcc 28164373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 3599 - 3462
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaac-tatgcatcttcttcattttgtttgg 111  Q
    ||||||||||||||||||||||  |||||||||| || ||||||||||||||||||||  | ||||||  |||| ||||| |||||||||||||||||||    
T  3599 gagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaacctatgcctcttcttcattttgtttgg 3500  T
Q  112 acgaacttgtccacatcattcactgctacaagacaaag 149  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3499 acgaacttgtccacatcattcactgctacaagacaaag 3462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 14532 - 14397
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||||||||  |||||||||| || ||||||||||||||||||||  | ||||||  ||||||||| | |||||| |||||||||||    
T  14532 gagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcct-ttcttcgttttgtttgga 14434  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaag 149  Q
    ||||||||||||||| |||||||||||||||||||||    
T  14433 cgaacttgtccacataattcactgctacaagacaaag 14397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 48 - 191
Target Start/End: Original strand, 59615 - 59758
Alignment:
Q  48 gaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaa 147  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||| || |    
T  59615 gaagaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaacca 59714  T
Q  148 agagttgcttagtattgcccattttctatgatgtggaacctact 191  Q
    || ||||| | || |||||  |||||| || |||||||||||||    
T  59715 agggttgcctcgttttgcctgttttctttggtgtggaacctact 59758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 4e-40; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 48 - 191
Target Start/End: Original strand, 18073807 - 18073950
Alignment:
Q  48 gaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaa 147  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||| || |    
T  18073807 gaagaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaacca 18073906  T
Q  148 agagttgcttagtattgcccattttctatgatgtggaacctact 191  Q
    || ||||| | || |||||  |||||| || |||||||||||||    
T  18073907 agggttgcctcgttttgcctgttttctttggtgtggaacctact 18073950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 18679729 - 18679547
Alignment:
Q  15 gatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacg 114  Q
    |||||||||| ||||||||| | ||| ||||| ||||| |||||||| || |||||  | ||||||  ||||||||| ||||||||||||||||||||||    
T  18679729 gatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttggacg 18679630  T
Q  115 aacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacata 197  Q
    ||||||||||||||||||||||||||||||||||| || |  | || |||||  |||||||||  ||||| ||||||||||||    
T  18679629 aacttgtccacatcattcactgctacaagacaaagggtcgtcttgttttgcctgttttctatgtcgtggatcctactcacata 18679547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 18655639 - 18655456
Alignment:
Q  15 gatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacg 114  Q
    |||||||||| ||||||||| | ||| |||||  |||| |||||||| ||||||||  | ||||||  ||||||||| ||||||||||||||||||||||    
T  18655639 gatgaaatcaaaccatcactcgacaatgccattcaagagtctaggatctttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacg 18655540  T
Q  115 aacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacatac 198  Q
    ||||||||| ||||||||||||||||||||||||| || |  | || || ||  |||||||||  ||||| |||||||||||||    
T  18655539 aacttgtccgcatcattcactgctacaagacaaagggtcgtctcgtttttcctgttttctatggcgtggatcctactcacatac 18655456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 18731666 - 18731483
Alignment:
Q  15 gatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacg 114  Q
    |||||||||| ||||||||| | ||| ||||| ||||| |||||||| || |||||  | ||||||  ||||||||| ||||||||||||||||||||||    
T  18731666 gatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttggacg 18731567  T
Q  115 aacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacatac 198  Q
    |||||||||||||||| |||||||||||||||||| || |  | || |||||  |||||||||  ||||| |||| ||||||||    
T  18731566 aacttgtccacatcatgcactgctacaagacaaagggtcgtcttgttttgcctgttttctatggcgtggatcctagtcacatac 18731483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 17989182 - 17989088
Alignment:
Q  48 gaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaa 142  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  17989182 gaagaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaa 17989088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 18699562 - 18699429
Alignment:
Q  15 gatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacg 114  Q
    |||||||||| ||||||||| | ||| ||||| ||||| |||||||| || |||||  | ||||||  ||||||||| ||||||||||||||||||||||    
T  18699562 gatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttggacg 18699463  T
Q  115 aacttgtccacatcattcactgctacaagacaaa 148  Q
    ||||||| ||||||||||||||||||||||||||    
T  18699462 aacttgttcacatcattcactgctacaagacaaa 18699429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 18724247 - 18724064
Alignment:
Q  15 gatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacg 114  Q
    |||||||||| ||||||||| | ||| ||||| ||||| |||||||| || |||||  | ||||||  ||||||||| |||||||||||||||||| |||    
T  18724247 gatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttgaacg 18724148  T
Q  115 aacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcacatac 198  Q
    |||||||||||||||| |||||||||||||||||| || |  | || |||||  |||||||||  ||||| |||| ||||||||    
T  18724147 aacttgtccacatcatgcactgctacaagacaaagggtcgtcttgttttgcctgttttctatggcgtggatcctagtcacatac 18724064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 5091125 - 5090951
Alignment:
Q  19 aaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaact 118  Q
    |||| ||||| |||||| ||||||||||  ||||||||| |||| | |||  | | || |||  | ||||||| |||||||| |||||||| || |||||    
T  5091125 aaataacaccgtcacttctcaaggccattcaagaatctaagattgtcattatcgttttctctaaccactatgcttcttcttcgttttgtttagatgaact 5091026  T
Q  119 tgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactca 193  Q
    |||||| || |||||||||| ||||  |||  ||||| | || ||||| |||||||||| |||||||||| ||||    
T  5091025 tgtccatattattcactgctccaaggaaaatggttgcctggttttgcctattttctatggtgtggaaccttctca 5090951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 42982 - 43151
Alignment:
Q  19 aaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaact 118  Q
    |||| |||||||||||| |||||||||| ||||| ||||||||||| |||||  | || |||  ||| ||||| |||||||||||||| |||||||||||    
T  42982 aaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaact 43081  T
Q  119 tgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacct 188  Q
    |||||||||||||||||||| ||||| |||  |  || |||| ||||| |||||||||||||||||||||    
T  43082 tgtccacatcattcactgctgcaagaaaaatggacgcctagttttgccaattttctatgatgtggaacct 43151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 34735 - 34916
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    |||||||||| |||||||||||| |||||||||| ||||| ||||||||||| |||||  | || |||  ||| ||||| |||||||||||||| |||||    
T  34735 gagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttgga 34834  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactcac 194  Q
    |||||||||||||||||||||||||| ||||  ||   |  |  |||| ||||| ||||||||||||||||||||| |||||    
T  34835 cgaacttgtccacatcattcactgcttcaaggaaagcgggcgtctagttttgccaattttctatgatgtggaaccttctcac 34916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 27460 - 27638
Alignment:
Q  15 gatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacg 114  Q
    |||||||| ||| |||||||| |||||| ||| ||||||||||||||||| |||||  | || |||  ||| ||||| |||||||||||||| |||||||    
T  27460 gatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacg 27559  T
Q  115 aacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccattttctatgatgtggaacctactca 193  Q
    ||||||||||||||||||| |||| ||||  |||  |  || | || ||||| ||||||||||||||||||||| ||||    
T  27560 aacttgtccacatcattcattgcttcaaggaaaatcggcgccttgttttgccaattttctatgatgtggaaccttctca 27638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 116811 - 116931
Alignment:
Q  18 gaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaac 117  Q
    ||||| ||||| |||||| |||||||||| ||||| ||||||||||| ||||| || || |||  ||| ||||| |||||||| ||||| ||||| ||||    
T  116811 gaaataacaccgtcacttttcaaggccattgaagagtctaggattttcattcctattttgtctatcaattatgcttcttcttccttttgcttggatgaac 116910  T
Q  118 ttgtccacatcattcactgct 138  Q
    |||||||||| ||||||||||    
T  116911 ttgtccacattattcactgct 116931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 29273945 - 29273811
Alignment:
Q  15 gatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacg 114  Q
    |||||||||| | ||||||| | ||| | ||| ||||| ||||| |||||||||||  | ||||||  ||||||||| ||||||||||||||||||||||    
T  29273945 gatgaaatcaaatcatcactcgacaatgtcattgaagagtctagaatttttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacg 29273846  T
Q  115 aacttgtccacatcattcactgctacaagacaaag 149  Q
    |||||||||||||||||||||||||||||||||||    
T  29273845 aacttgtccacatcattcactgctacaagacaaag 29273811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 4848 - 4712
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||||| ||   ||||||||| || ||||||||||||||||||||  | ||||||  |  |||||| | |||||| |||||||||||    
T  4848 gagatgaaatcacaccatccctccgcaaggccattgatgaatctaggatttttattcctgtgttttctatcttctatgccttttcttcgttttgtttgga 4749  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaag 149  Q
    ||||||||||||||| |||||||||||||||||||||    
T  4748 cgaacttgtccacataattcactgctacaagacaaag 4712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 13809 - 13674
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  | ||||||  |||||| ||  ||||   |||||| |||||    
T  13809 gagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacttcaaaattttgcttgga 13710  T
Q  113 cgaacttgtccacatcattcactgctacaagacaaa 148  Q
    ||||||||| ||||| ||||| ||||||||||||||    
T  13709 cgaacttgttcacattattcattgctacaagacaaa 13674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 3279700 - 3279823
Alignment:
Q  15 gatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacg 114  Q
    ||||||||||||| |||||||||||||||||||||||| || | ||||||||||||  | || |||  ||||||||| ||||||  ||||||||||||||    
T  3279700 gatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgtttggacg 3279799  T
Q  115 aacttgtccacatcattcactgct 138  Q
    ||||||||||||||||||| ||||    
T  3279800 aacttgtccacatcattcattgct 3279823  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 17993789 - 17993736
Alignment:
Q  85 actatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 138  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  17993789 actatgcttcttcttcattttgtttagacgaacttgtccacatcattcaatgct 17993736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 7535 - 7668
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgga 112  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  | ||||||  |||||| ||  ||||   |||||| |||||    
T  7535 gagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacttcaaaattttgcttgga 7634  T
Q  113 cgaacttgtccacatcattcactgctacaagaca 146  Q
    ||||||||| ||||| ||||| ||||||||||||    
T  7635 cgaacttgttcacattattcattgctacaagaca 7668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 58454 - 58334
Alignment:
Q  18 gaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaac 117  Q
    ||||| |||||||||||| ||||||||||  |||| ||||||||||| |||||| | || |||  ||||||||| |||||||||||||| ||| ||||||    
T  58454 gaaataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttcattttgcttgaacgaac 58355  T
Q  118 ttgtccacatcattcactgct 138  Q
    |||||||||||||||||||||    
T  58354 ttgtccacatcattcactgct 58334  T

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Target: scaffold1254 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 94 - 37
Alignment:
Q  13 gagatgaaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcc 70  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  94 gagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcc 37  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 16689027 - 16689139
Alignment:
Q  19 aaatcacaccatcacttgtcaaggccatcgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaact 118  Q
    ||||||||||||||||| ||||||| || ||||| || ||||||   || ||| | ||||||   |||||||||| ||| || ||||||||||| |||||    
T  16689027 aaatcacaccatcacttatcaaggcaattgaagactcaaggattgcaatccccgtgttttctaagaactatgcattttcctcgttttgtttggatgaact 16689126  T
Q  119 tgtccacatcatt 131  Q
    |||| ||||||||    
T  16689127 tgtcaacatcatt 16689139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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