View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11427_low_6 (Length: 608)
Name: NF11427_low_6
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11427_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 18 - 593
Target Start/End: Original strand, 19396001 - 19396576
Alignment:
| Q |
18 |
gctcagaagttgccttgattcagcaaatatcatctccatctttttcttcaattctccttccgggaaaccgtcagaacaagtgtcttggtaagatataaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19396001 |
gctcagaagttgccttgattcagcaaatatcatctccatctttttcttcaattctccttccgggaaaccgtcagaacaagtgtcctggtaagatataaca |
19396100 |
T |
|
| Q |
118 |
gcactaagccaattgttcaactcagcttcttttgaagctagtttgctaatatcaagttgcccgacttcagtgatcgagaatcccatttcttctttagcat |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19396101 |
gcactaagccagttgttcaactcagcttcttttgaagctagtttgctaatatcaagttgcccgacttcagtgatcgagaatcccatttcttctttagcat |
19396200 |
T |
|
| Q |
218 |
cctcaaacaactgtttacaatcttcataagctcccttttcttccttggaagcgaatttcaagttcgcggttttgttgaatgcgttgttaatttcattctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19396201 |
cctcaaacaactgtttacaatcttcataagctcccttttcttccttggaagcgaatttcaagttcgcggttttgttgaatgcgttgttaatttcattctt |
19396300 |
T |
|
| Q |
318 |
ggcaactagcatgaaaaccattagaagaccctttggttctttcaatttagggtcttttttcaatgcctctttaagtgtggttacacatttttccttgtat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19396301 |
ggcaactagcatgaaaaccattagaagaccctttggttctttcaatttagggtcttttttcaatgcctctttaagtgtggttacacatttttccttgtat |
19396400 |
T |
|
| Q |
418 |
tctgagtggctgcacaacattgtcacaagcctcgagtatttatcaacacgctcgggttctggcggtgcgttttgaactggtttcttatcattattattat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19396401 |
tctgagtggctgcacaacattgtcacaagcctcgagtatttatcaacacgctcgggttctggcggtgcgttttgaactggtttcttatcattattattat |
19396500 |
T |
|
| Q |
518 |
gatctggtcctgatcttttgacaatgacaaatgttacagctgctataacacatgctatgagaacaacagaagttac |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19396501 |
gatctggtcctgatcttttgacaatgacaaatgttacagctgctataacacatgctatgagaacaacagaagttac |
19396576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University