View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11427_low_9 (Length: 546)
Name: NF11427_low_9
Description: NF11427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11427_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 280 - 528
Target Start/End: Original strand, 23430456 - 23430704
Alignment:
| Q |
280 |
gcttattattactttctcttgcatacaaaaatgtccaaagtcatgaccttagcgttgctcatgctcctagttgatactcttcctaccatggcgctttctg |
379 |
Q |
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| T |
23430456 |
gcttattattactttctcttgcatacaaaaatgtccaaagtcatgaccttagcgctgctcatgctcctagttgatactcttcctaccatggcgctttctg |
23430555 |
T |
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| Q |
380 |
aagaggttaagaatcttcccaccacttattctccaacccatgttcacctgacattgccttccactcgtagaagcatgcaaggggtcttcaatgttgttag |
479 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23430556 |
aagaggttaagaatcttcccaccacttactctccaacccatgttcacctgacattgccttccactcgtagaagcatgcaaggggtcttcaatgttgttag |
23430655 |
T |
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| Q |
480 |
tgaaggtgcagataggattggtgaaactgcaaaagatgttggaaatatc |
528 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23430656 |
tgaaggtgcagataggattggtgaaactgcaaaagatgttggaaatatc |
23430704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 109 - 260
Target Start/End: Original strand, 23430316 - 23430468
Alignment:
| Q |
109 |
gttgacctctaattttataggtgtgagttaatctcctaacaaactttgacaccagacaatcctggtt--ggcattcatttttcatctatatataaagcga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
23430316 |
gttgacctctaattttataggtgtgagttaatctcctaacaaactttgacaccagacaatcctggttggggcattcatttttcatctatatataaaacga |
23430415 |
T |
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| Q |
207 |
gaatcatacattaattaaatccatttttcttctacaataaagcttattattact |
260 |
Q |
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| T |
23430416 |
gaatcatacattaattaaatcca-ttttcttctacaataaagcttattattact |
23430468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 280 - 453
Target Start/End: Original strand, 23438513 - 23438687
Alignment:
| Q |
280 |
gcttattattactttctcttgcatac-aaaaatgtccaaagtcatgaccttagcgttgctcatgctcctagttgatactcttcctaccatggcgctttct |
378 |
Q |
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||||||| ||||||||||||||||| ||||||||| ||||||||| ||||||| || ||||||||||||||||| || |||| || | || ||||||| |
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| T |
23438513 |
gcttatttttactttctcttgcataagaaaaatgtcaaaagtcatggccttagcattactcatgctcctagttgagacaattcccactacggtgctttct |
23438612 |
T |
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| Q |
379 |
gaagaggttaagaatcttcccaccacttattctccaacccatgttcacctgacattgccttccactcgtagaagc |
453 |
Q |
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| T |
23438613 |
aaagaggttgagactcttcccacgacttactcttctacccatcttcacctgacattgccttccactcgtagaagc |
23438687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 281 - 462
Target Start/End: Original strand, 23445250 - 23445431
Alignment:
| Q |
281 |
cttattattactttctcttgcatacaaaaatgtccaaagtcatgaccttagcgttgctcatgctcctagttgatactcttcctaccatggcgctttctga |
380 |
Q |
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|||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||| | ||||||||| ||||| || | || ||||||||| |
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| T |
23445250 |
cttatttttactttctcttgcatatcaaaatgtccaaagccatgaccttagtgttgctcctcctcctagttttgtctcttttcactacggtgctttctga |
23445349 |
T |
|
| Q |
381 |
agaggttaagaatcttcccaccacttattctccaacccatgttcacctgacattgccttccactcgtagaagcatgcaaggg |
462 |
Q |
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||||||| ||| ||||||| ||||||| ||||| |||||| ||||| |||||||||||||||| ||||| |||||| |||| |
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| T |
23445350 |
agaggttgagactcttcccgccacttactctcctacccatattcacatgacattgccttccaccggtagacgcatgctaggg |
23445431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 109 - 260
Target Start/End: Original strand, 23438369 - 23438525
Alignment:
| Q |
109 |
gttgacctctaattttataggtgtgagttaatctcctaacaaactttgacaccagacaatcctggttggc----attcatttttcatctatatataaagc |
204 |
Q |
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|||||| ||||||||||||| ||||||||||||| |||||||||||||| |||| |||| |||||||| ||||||||||| |||||||||||||| |
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| T |
23438369 |
gttgacttctaattttatagatgtgagttaatct---aacaaactttgacagcagagaatcatggttggcgtccattcatttttcttctatatataaagc |
23438465 |
T |
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| Q |
205 |
gagaatcatacattaattaa----atccatttttcttctacaataaagcttattattact |
260 |
Q |
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||||| | ||||| |||| |||||||||||||| | ||||||||||||| ||||| |
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| T |
23438466 |
aagaattagacattcattactcacatccatttttcttcaataataaagcttatttttact |
23438525 |
T |
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