View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11428_high_10 (Length: 391)
Name: NF11428_high_10
Description: NF11428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11428_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 30315695 - 30316014
Alignment:
| Q |
18 |
aagaggtagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30315695 |
aagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
30315794 |
T |
|
| Q |
118 |
ggaagaaggtcgaagccagagaaaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcatgtatgctgtaaggaact |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30315795 |
ggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatgttatgcatgtatgctgtaaggaact |
30315894 |
T |
|
| Q |
218 |
atagctcatagtgagcaaagaataaaacgtcattatcttgtaactataactagagttccaccttttgtactatgaataaattaatcaagaataagttttg |
317 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30315895 |
atagctcatagtgagcaaagaataaaacggcattatcttgtaattgtaactagagttccaccttttgtactatgaataaattaatcaagaataagttttg |
30315994 |
T |
|
| Q |
318 |
tgccacctctcttgctacta |
337 |
Q |
| |
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||||||||||||| |||||| |
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| T |
30315995 |
tgccacctctcttactacta |
30316014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 30304829 - 30305147
Alignment:
| Q |
18 |
aagaggtagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30304829 |
aagagctagcattccctggatcagctcaagatgttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
30304928 |
T |
|
| Q |
118 |
ggaagaaggtcgaagccagagaaaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcatgtatgctgtaaggaact |
217 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || ||| || |
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| T |
30304929 |
ggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcaagtatgatatatggagct |
30305028 |
T |
|
| Q |
218 |
atagctcatagtgagcaaagaataaaacgtcattatcttgtaactataactagagttccaccttttgtactatgaataaattaatcaagaataagttttg |
317 |
Q |
| |
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|||||| ||| ||||| | |||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| | |||||||||||||||||| |
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| T |
30305029 |
atagctaataatgagcgatgaataaaacggcattatcttgtaactataactagagttccacc-tttctactatgaataactgaatcaagaataagttttg |
30305127 |
T |
|
| Q |
318 |
tgccacctctcttgctacta |
337 |
Q |
| |
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||||||||||||||||||| |
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| T |
30305128 |
agccacctctcttgctacta |
30305147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 30287161 - 30287462
Alignment:
| Q |
18 |
aagaggtagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287161 |
aagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
30287260 |
T |
|
| Q |
118 |
ggaagaaggtcgaagccagagaaaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcatgtatgctgtaaggaact |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30287261 |
ggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatgttatgcatgtatgctgtaaggaact |
30287360 |
T |
|
| Q |
218 |
atagctcatagtgagcaaagaataaaacgtcattatcttgtaactataactagagttccaccttttgtactatgaataaattaatcaagaataagttttg |
317 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |||||||||| ||||||||||||| || ||| ||||||||||||||||||||||||||||||||| |
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| T |
30287361 |
atagctcataatgagaaaagaataaaacggcattatcttg------taactagagttcctcc-tttctactatgaataaattaatcaagaataagttttg |
30287453 |
T |
|
| Q |
318 |
tgccacctc |
326 |
Q |
| |
|
|||| |||| |
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|
| T |
30287454 |
tgcctcctc |
30287462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 30300037 - 30300349
Alignment:
| Q |
18 |
aagaggtagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30300037 |
aagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
30300136 |
T |
|
| Q |
118 |
ggaagaaggtcgaagccagagaaaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcatgtatgctgtaaggaact |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
30300137 |
ggaagaaggtcgaagccagagacaaagggagcttatatcttcaattttgggagtattttaatgagtgatcaaatattatgcttgtatgctgtaaggagtc |
30300236 |
T |
|
| Q |
218 |
atagctcatagtgagcaaagaataaaacgtcattatcttgtaactataactagagttccaccttttgtactatgaataaattaatcaagaataagttttg |
317 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||||| || ||||||||||||| ||| || ||||||||||||||||||||||||||||| |
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| T |
30300237 |
atagctcatagtgagcagagaataaaacggcaatatcttg------tatctagagttccacc-tttccaccatgaataaattaatcaagaataagttttg |
30300329 |
T |
|
| Q |
318 |
tgccacctctcttgctacta |
337 |
Q |
| |
|
||||||||||||| |||||| |
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| T |
30300330 |
tgccacctctcttactacta |
30300349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 30292195 - 30292485
Alignment:
| Q |
18 |
aagaggtagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30292195 |
aagagctagcattccctggatcagctcaagatgttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
30292294 |
T |
|
| Q |
118 |
ggaagaaggtcgaagccagagaaaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcatgtatgctgtaaggaact |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| |||||||| |||||||| || |
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|
| T |
30292295 |
ggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaacgttttaatg--------cttattatgcttgtatgctcta------- |
30292379 |
T |
|
| Q |
218 |
atagctcatagtgagcaaagaataaaacgtcattatcttgtaactataactagagttccaccttttgtactatgaataaattaatcaagaataagttttg |
317 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| |
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|
| T |
30292380 |
--agctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttcca-ctttcctactatgaataaattaatcaagaacaagttttg |
30292476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 46810486 - 46810582
Alignment:
| Q |
18 |
aagaggtagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaaggga |
114 |
Q |
| |
|
||||||| |||||||||||||| ||| |||| ||||| |||||| ||||||| || |||||||||||||||||||||||||| |||||||||||||| |
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| T |
46810486 |
aagaggttgcattccctggatctgctgaagaggttgataggctaataaagaaccaaagacaatcttactttgcaaatgctcaacctcaacaaaggga |
46810582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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