View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11428_high_11 (Length: 388)
Name: NF11428_high_11
Description: NF11428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11428_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 41352542 - 41352167
Alignment:
| Q |
18 |
tcttcatgctcaagcaatattaattttaattgacaataacacttactaaaccatgacatagcttcctctttttctccaacaacatttggtacctaccttg |
117 |
Q |
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| T |
41352542 |
tcttcatgctcaagcaatattaattttaattgacaataacacttactaaaccatgacatagcttcctctttttctccaacaacatttggtacctaccttg |
41352443 |
T |
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| Q |
118 |
aacttctttgccttaattcactttgcttattaaccaaaattacatattattccttcactttttcactttcattttaccttgatggttaagcacacactta |
217 |
Q |
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| T |
41352442 |
aacttctttgccttaattcactttgcttattaaccaaaattacatattattccttcactttttcactttcattttaccttgatggttaagcacacactta |
41352343 |
T |
|
| Q |
218 |
gttaccgtgcctaaaccaatgtggaatcattaaat---------------ttgagtatactacaagcagtaaccacactagccacagtgcatcattcttt |
302 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41352342 |
gttaccgtgcctaaaccaatatggaatcattaaatttgatttttttgattttgagtatactacaagcagtaaccacactagccacagtgcatcattcttt |
41352243 |
T |
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| Q |
303 |
atcaatccattcagcagcaactcttcctgaacttcggccgcccaactttccgaacgacacactagataatcctttg |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41352242 |
atcaatccattcagcagcaactcttcctgaacttcggccgcccaactttccgaacgacacactagataatcctttg |
41352167 |
T |
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