View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11428_high_12 (Length: 385)
Name: NF11428_high_12
Description: NF11428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11428_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 21 - 381
Target Start/End: Complemental strand, 49485573 - 49485213
Alignment:
| Q |
21 |
actaaggagtaataatgtttgaattgatagcagggaaaattccctcagatgcttctgacataaacattctcagcatgattaaaactaatgattttcttat |
120 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49485573 |
actaaggagtaataatgtttgaattgatagcagggcaaattccctcagatgcttctgacataaacattctcagcatgattaaaactaatgattttcttat |
49485474 |
T |
|
| Q |
121 |
cactaggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtcaaatcacaaaattatgaccaagctcctct |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49485473 |
cactaggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtcaaatcacaaaattatgaccaagctcctct |
49485374 |
T |
|
| Q |
221 |
caagaattttttgttatcttgatagattccatatcccaagaaaatggggacttccttctcttgaagaaactggcttcttatccttctatcacttggttgg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49485373 |
caagaattttttgttatcttgatagattccatatcccaagaaaatggggacttccttctcttgaagaaactggcttcttatccttctatcacttggttgg |
49485274 |
T |
|
| Q |
321 |
tgatgagattcctttgaacacttttcttaattttattttactttcccctattctaactctg |
381 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49485273 |
tgatgagattcctttgaacacttttcttaattttattttactttcccctattctaactctg |
49485213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 109 - 338
Target Start/End: Complemental strand, 49701992 - 49701766
Alignment:
| Q |
109 |
tgattttcttatcactaggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtcaaatcacaaaattatga |
208 |
Q |
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| T |
49701992 |
tgattttcttatcattaggttctgccatctttgagagaaaagaaagatgaacttttgttgagagaactacttgaaagatggtcaaatcacaaaattatga |
49701893 |
T |
|
| Q |
209 |
ccaagctcctctcaagaattttttgttatcttgatagattccatatcccaagaaaatggggacttccttctcttgaagaaactggcttcttatccttcta |
308 |
Q |
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||||||||||||||||||||||| |||||||| ||| || |||||||| | ||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49701892 |
ccaagctcctctcaagaatttttcgttatcttcataaataccatatcc---gtaaaaggggactttcttctcttgaagaaactggcttcttatccttcta |
49701796 |
T |
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| Q |
309 |
tcacttggttggtgatgagattcctttgaa |
338 |
Q |
| |
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| |||||||||||| ||||||||||||||| |
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| T |
49701795 |
ttacttggttggtgctgagattcctttgaa |
49701766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 109 - 335
Target Start/End: Complemental strand, 49532185 - 49531962
Alignment:
| Q |
109 |
tgattttcttatcactaggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtcaaatcacaaaattatga |
208 |
Q |
| |
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||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||| ||| |||||||||||||| ||||||||||| |||||||| ||||| |
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| T |
49532185 |
tgattttcttatcactaggttctgccatcgttgagaggaaagaaagatgaacttttgttgagagaactgctcggaagatggtcaattcacaaaactatga |
49532086 |
T |
|
| Q |
209 |
ccaagctcctctcaagaattttttgttatcttgatagattccatatcccaagaaaatggggacttccttctcttgaagaaactggcttcttatccttcta |
308 |
Q |
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||||| ||||| | ||||| |||||||||||||| | ||| | ||| | | ||||||||||||||||||||| |||||| || |||||||| |
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| T |
49532085 |
ccaagtgtctctctaagttttttcattatcttgatagatactttat---aggaagacagcgacttccttctcttgaagaaattggcttgttgtccttcta |
49531989 |
T |
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| Q |
309 |
tcacttggttggtgatgagattccttt |
335 |
Q |
| |
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| |||||||||||||||||||| |||| |
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| T |
49531988 |
tgacttggttggtgatgagatttcttt |
49531962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 94 - 317
Target Start/End: Complemental strand, 49521206 - 49520984
Alignment:
| Q |
94 |
catgattaaaactaat--gattttcttatcactaggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtc |
191 |
Q |
| |
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|||||||||||||||| |||||||| ||||||||||||| ||||| ||||||| ||| ||||||||||| ||| ||||||||||| || ||||||||| |
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| T |
49521206 |
catgattaaaactaatatgattttctaatcactaggttctgccatcattgagaggaaagaaagatgaacttttgttgagagaactggtccaaagatggtc |
49521107 |
T |
|
| Q |
192 |
aaatcacaaaattatgaccaagctcctctcaagaattttttgttatcttgatagattccatatcccaagaaaatggggacttccttctcttgaagaaact |
291 |
Q |
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|||||| |||| |||||||| | |||||||| |||| |||||||||||||| | ||| ||||| | || ||| |||||||||||||||| |
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| T |
49521106 |
aaatcagaaaactatgaccaggtgtctctcaaggtgttttcattatcttgatagatacttcatcaaaagaa---gagggcttaattctcttgaagaaact |
49521010 |
T |
|
| Q |
292 |
ggcttcttatccttctatcacttggt |
317 |
Q |
| |
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| ||||||||||||||| ||||||| |
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| T |
49521009 |
gctttcttatccttctataacttggt |
49520984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 113 - 331
Target Start/End: Original strand, 55070939 - 55071154
Alignment:
| Q |
113 |
tttcttatcactaggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtcaaatcacaaaattatgaccaa |
212 |
Q |
| |
|
|||||||| | |||||||| ||||||||| ||||||| || ||||| || ||| ||||||||||||| | ||||| |||| || ||| | ||||||||| |
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| T |
55070939 |
tttcttattaataggttctgccatctttgggagaaaagaaggatgaccttttgttgagagaactgcttagaagatagtcagattacatagttatgaccag |
55071038 |
T |
|
| Q |
213 |
gctcctctcaagaattttttgttatcttgatagattccatatcccaagaaaatggggacttccttctcttgaagaaactggcttcttatccttctatcac |
312 |
Q |
| |
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|| |||||||| | ||||||| |||||||| || | | || ||||| || ||||||||||||||||||||| |||||| ||||||| || ||| |
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| T |
55071039 |
gcgcctctcaaaagttttttggtatcttgaacgacgcgacattccaag---atataaacttccttctcttgaagaaaccggcttcatatccttttaccac |
55071135 |
T |
|
| Q |
313 |
ttggttggtgatgagattc |
331 |
Q |
| |
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||||| |||||||||||| |
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| T |
55071136 |
ctggttagtgatgagattc |
55071154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 55066629 - 55066740
Alignment:
| Q |
112 |
ttttcttatcactaggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtcaaatcacaaaattatgacca |
211 |
Q |
| |
|
||||||||| | ||||| ||||||||| || |||||| ||||||||| ||| ||||||||||| ||| ||||||||||||| ||||||||| ||||| |
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| T |
55066629 |
ttttcttattaataggt-cttccatctctgcaagaaaagcaagatgaacctttgttgagagaactgttcagaagatggtcaaattacaaaattacgacca |
55066727 |
T |
|
| Q |
212 |
agctcctctcaag |
224 |
Q |
| |
|
| | ||||||||| |
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| T |
55066728 |
aacgcctctcaag |
55066740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 50240273 - 50240198
Alignment:
| Q |
126 |
ggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtcaaatcacaaa |
201 |
Q |
| |
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|||||| |||||||| ||| ||| ||||||||||||||| | |||||| |||||| ||||||| ||||||||||| |
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|
| T |
50240273 |
ggttctgccatctttacgaggaaagaaagatgaactcttgttaagagaattgctcagaagatggccaaatcacaaa |
50240198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 334
Target Start/End: Original strand, 55066785 - 55066847
Alignment:
| Q |
272 |
ttccttctcttgaagaaactggcttcttatccttctatcacttggttggtgatgagattcctt |
334 |
Q |
| |
|
||||||||||||||||||| | ||||||| ||| || ||| ||||||||||||||||||||| |
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| T |
55066785 |
ttccttctcttgaagaaaccagattcttatgcttttaccacctggttggtgatgagattcctt |
55066847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 328
Target Start/End: Original strand, 54150739 - 54150791
Alignment:
| Q |
276 |
ttctcttgaagaaactggcttcttatccttctatcacttggttggtgatgaga |
328 |
Q |
| |
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|||||||||||||| ||||||||||||||| ||| ||||||||||| |||||| |
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| T |
54150739 |
ttctcttgaagaaattggcttcttatccttttatgacttggttggtcatgaga |
54150791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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