View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11428_high_15 (Length: 316)
Name: NF11428_high_15
Description: NF11428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11428_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 2440888 - 2440611
Alignment:
| Q |
18 |
ggtacaccctcacccattcacaaagcttgttgatcaatgatgcatggctaatgtagctcgttggagaagaattgttcgctgtggcccaaaggtcatttgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2440888 |
ggtacaccctcacccattcacaaagcttgttgatcaatgatgcatggctaatgtagctcgttggagaagaattgttcgctgtggcccaaaggtcatttac |
2440789 |
T |
|
| Q |
118 |
taggagacggccaacattgactggttcacccttaaggattgcagttaacaaggttgctttctgaatggtcaagtctgacacatttgaacatgggagcaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2440788 |
taggagacggccaacattgactggttcacccttaaggattgcagttagcaaggttgctttctgaatggtcaagtctgacacatttgaacatgggagcaag |
2440689 |
T |
|
| Q |
218 |
gtatgcaaaacaaatgttgcccatgctttagcaatgggtgtcaggtcagtagagtgaagttttcttggtgttccgtct |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2440688 |
gtatgcaaaacaaatgttgcccatgctttagcaatgggtgtcaggtcagtagagtgaagttttcttggtgttccgtct |
2440611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 41656219 - 41656494
Alignment:
| Q |
18 |
ggtacaccctcacccattcacaaagcttgttgatcaatgatgcat--ggctaatgtagctcgttggagaagaattgttcgctgtggcccaaaggtcattt |
115 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| |||| || || | ||||||||| | ||||| ||| ||||||||||||| ||||||||||| |
|
|
| T |
41656219 |
ggtacaccctcaccctttcacaaagcttattgatcaacgatgtatatggttgatgtagctcttgggagaggaacagttcgctgtggccgaaaggtcattt |
41656318 |
T |
|
| Q |
116 |
gctaggagacggccaacattgactggttcacccttaaggattgcagttaacaaggttgctttctgaatggtcaagtctgacacatttgaacatgggagca |
215 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| || |||| |
|
|
| T |
41656319 |
gctaggagacggacgacattgactggttcgcccttaaggattgcagttatcaaggttgctttctgaaggggcaagtctgacacatttgaactcggaagca |
41656418 |
T |
|
| Q |
216 |
aggtatgcaaaacaaatgttgcccatgctttagcaatgggtgtcaggtcagtagagtgaagttttcttggtgttcc |
291 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |
|
|
| T |
41656419 |
aggtatgcaaaataaatgtttcccatgctttagcaatgggtgtcaggtcagaagagttaagttttattggtgttcc |
41656494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 34 - 291
Target Start/End: Original strand, 41664998 - 41665255
Alignment:
| Q |
34 |
ttcacaaagcttgttgatcaatgatgcatggctaatgtagctcgttggagaagaattgttcgctgtggcccaaaggtcatttgctaggagacggccaaca |
133 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | || |||||| | ||||| ||| |||||||||||||| || ||||||||||||||||| || ||| |
|
|
| T |
41664998 |
ttcacaaagcttgttgatcaacgatgcatggttgatatagctcttgggagaggaacagttcgctgtggcccggagatcatttgctaggagacgaccgaca |
41665097 |
T |
|
| Q |
134 |
ttgactggttcacccttaaggattgcagttaacaaggttgctttctgaatggtcaagtctgacacatttgaacatgggagcaaggtatgcaaaacaaatg |
233 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| |
|
|
| T |
41665098 |
ttgactggttcacccttaagaattgcagtcagcaaggttgctttctgaatggtcaagtctgacacatttgaacacgggagcaaggttcgcaaaataaatg |
41665197 |
T |
|
| Q |
234 |
ttgcccatgctttagcaatgggtgtcaggtcagtagagtgaagttttcttggtgttcc |
291 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || ||| ||| || ||||||||| |
|
|
| T |
41665198 |
ttgcccatgctttagcaatgggtgtgaggtcagaagtgtggagtcttgatggtgttcc |
41665255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 41706213 - 41706490
Alignment:
| Q |
18 |
ggtacaccctcacccattcacaaagcttgttgatcaatgatgcatggctaatgtagctcgttggagaagaattgttcgctgtggcccaaaggtcatttgc |
117 |
Q |
| |
|
|||||||| |||||| ||||||||||||| ||||||||||||||| | ||||| |||| |||||||||| || |||||| |||||||||||| ||| |
|
|
| T |
41706213 |
ggtacaccttcaccctttcacaaagcttgcgtatcaatgatgcatggttgatgtaactcgatggagaagaacaattggctgtgacccaaaggtcatctgc |
41706312 |
T |
|
| Q |
118 |
taggagacggccaacattgactggttcacccttaaggattgcagttaacaaggttgctttctgaatggtcaagtctgacacatttgaacatgggagcaag |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| || | |||| ||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41706313 |
taggagacgaccaacattgactggttcacccttaaggattgctgtcagcaagtttgcttttagaatggtcaagtctgacacatttgaacacgggagcaag |
41706412 |
T |
|
| Q |
218 |
gtatgcaaaacaaatgttgcccatgctttagcaatgggtgtcaggtcagtagagtgaagttttcttggtgttccgtct |
295 |
Q |
| |
|
||| |||||||||| |||||||| ||||||||| |||||| ||||||| || | |||||||| | |||||||||||| |
|
|
| T |
41706413 |
gtacgcaaaacaaacattgcccatactttagcaaggggtgtgaggtcagaagtgcgaagttttgtcggtgttccgtct |
41706490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 102 - 258
Target Start/End: Original strand, 41648214 - 41648370
Alignment:
| Q |
102 |
cccaaaggtcatttgctaggagacggccaacattgactggttcacccttaaggattgcagttaacaaggttgctttctgaatggtcaagtctgacacatt |
201 |
Q |
| |
|
|||||||||| | |||||||||||| |||||||||| |||||||||||| ||||||||||| | |||||| | |||| |||||||||| |||||| |||| |
|
|
| T |
41648214 |
cccaaaggtcttctgctaggagacgaccaacattgattggttcacccttcaggattgcagtcagcaaggtcgatttcggaatggtcaactctgacgcatt |
41648313 |
T |
|
| Q |
202 |
tgaacatgggagcaaggtatgcaaaacaaatgttgcccatgctttagcaatgggtgt |
258 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
41648314 |
tgaacatgggagtaatgtatgcaaaacaaatgttgtccatgctttcgcaatgggtgt |
41648370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 41716016 - 41716263
Alignment:
| Q |
18 |
ggtacaccctcacccattcacaaagcttgttgatcaatgatgcatggctaatgtagctcgttggagaagaattgttcgctgtggcccaaaggtcatttgc |
117 |
Q |
| |
|
||||||||||| ||| |||||||||| | | ||||||||||||||| | || | |||| ||||||| | || |||||| |||||| ||||||||| |
|
|
| T |
41716016 |
ggtacaccctctccctttcacaaagcatttgtatcaatgatgcatggttgatccaactcgagggagaagcacaatttgctgtgacccaaatgtcatttgc |
41716115 |
T |
|
| Q |
118 |
taggagacggccaacattgactggttcacccttaaggattgcagttaacaaggttgctttctgaatggtcaagtctgacacatttgaacatgggagcaag |
217 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||| | ||| | ||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41716116 |
taggagacgaccaacattgactggctcacccttaaggattgcagtcagtaagttagcttttagaatggtcaagtctgatctatttgaacatgggagcaag |
41716215 |
T |
|
| Q |
218 |
gtatgcaaaacaaatgttgcccatgctttagcaatgggtgtcaggtca |
265 |
Q |
| |
|
|| |||||||||| |||||||| ||||||||| ||| || |||||| |
|
|
| T |
41716216 |
gtgcgcaaaacaaacattgcccatactttagcaacgggagtgaggtca |
41716263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University