View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11428_high_20 (Length: 248)
Name: NF11428_high_20
Description: NF11428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11428_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 41351996 - 41351757
Alignment:
| Q |
1 |
agaagtagttgtcgggttcggtttgttgtagcaacaaagggctaatgtgcattgtgcacacatttggtgaccacaattctgaacttcaattgtgcatacc |
100 |
Q |
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| T |
41351996 |
agaagtagttgtcgggttcggtttgttgtagcaacaaagggctaatgtgcattgtgcacacatttggtgaccacaattctgaacttcaattgtgcatacc |
41351897 |
T |
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| Q |
101 |
tgctcaaagcagatgcaacataattctgactcactaacctgcataatatcatattccacaatgagaatgctatttcttttttggatcacatttataatgc |
200 |
Q |
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| T |
41351896 |
tgctcaaagcagatgcaacataattctgactcactaacctgcataatatcatattccacaatgagaatgctatttcttttttggatcacatttataatgc |
41351797 |
T |
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| Q |
201 |
aaattttaaacttggccaaataatcatctttcagcctttg |
240 |
Q |
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| T |
41351796 |
aaattttaaacttggccaaataatcatctttcagcctttg |
41351757 |
T |
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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 23714941 - 23714846
Alignment:
| Q |
46 |
tgtgcattgtgcacacatttggtgaccacaattctgaacttcaattgtgcatacctgctcaaagcagatgcaacataattctgactcactaacctg |
141 |
Q |
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| T |
23714941 |
tgtgcattgtgcacacatctggtggccacagtcttggacctcaattgtacacacctgctcaaagcagatgcagcataattccgtctcgctaacctg |
23714846 |
T |
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