View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11428_high_22 (Length: 243)

Name: NF11428_high_22
Description: NF11428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11428_high_22
NF11428_high_22
[»] chr1 (18 HSPs)
chr1 (42-243)||(52270944-52271153)
chr1 (175-241)||(26854160-26854226)
chr1 (179-239)||(19257650-19257710)
chr1 (174-241)||(25665609-25665676)
chr1 (179-239)||(25126690-25126750)
chr1 (174-240)||(23505965-23506031)
chr1 (174-239)||(11769833-11769898)
chr1 (200-239)||(25494354-25494393)
chr1 (193-239)||(23223624-23223670)
chr1 (193-239)||(26657686-26657732)
chr1 (193-239)||(30675694-30675740)
chr1 (193-238)||(12423773-12423818)
chr1 (174-239)||(26102267-26102332)
chr1 (174-238)||(23519608-23519672)
chr1 (198-238)||(30781971-30782011)
chr1 (193-239)||(18300861-18300907)
chr1 (193-238)||(50047386-50047431)
chr1 (176-240)||(21548857-21548921)
[»] scaffold0011 (1 HSPs)
scaffold0011 (166-243)||(228018-228095)
[»] chr3 (14 HSPs)
chr3 (166-243)||(18474376-18474453)
chr3 (177-243)||(19542966-19543032)
chr3 (195-239)||(19219071-19219115)
chr3 (174-239)||(23908110-23908175)
chr3 (193-238)||(25883314-25883359)
chr3 (187-243)||(5632395-5632451)
chr3 (176-243)||(8402392-8402459)
chr3 (193-239)||(18066007-18066053)
chr3 (174-239)||(10341997-10342062)
chr3 (174-238)||(11521376-11521440)
chr3 (203-235)||(19263772-19263804)
chr3 (174-225)||(27415391-27415442)
chr3 (193-238)||(1475138-1475183)
chr3 (190-239)||(21018087-21018136)
[»] chr4 (22 HSPs)
chr4 (174-243)||(31859740-31859809)
chr4 (179-241)||(17187381-17187443)
chr4 (186-235)||(23353832-23353881)
chr4 (174-239)||(33519240-33519305)
chr4 (175-239)||(17026537-17026601)
chr4 (174-236)||(29437674-29437736)
chr4 (174-235)||(4732970-4733031)
chr4 (166-243)||(13064632-13064709)
chr4 (176-236)||(21077446-21077506)
chr4 (174-240)||(20985232-20985298)
chr4 (193-238)||(1695705-1695750)
chr4 (199-239)||(5906627-5906667)
chr4 (174-238)||(15192414-15192478)
chr4 (174-221)||(26159983-26160029)
chr4 (175-225)||(18444454-18444504)
chr4 (193-239)||(18898192-18898238)
chr4 (174-239)||(19602008-19602073)
chr4 (174-239)||(22119831-22119895)
chr4 (174-239)||(27302987-27303052)
chr4 (175-239)||(5676410-5676474)
chr4 (203-235)||(12111196-12111228)
chr4 (198-238)||(51884813-51884853)
[»] chr5 (10 HSPs)
chr5 (164-243)||(22643734-22643813)
chr5 (174-239)||(19763725-19763790)
chr5 (174-235)||(26329909-26329970)
chr5 (174-239)||(16622516-16622581)
chr5 (193-238)||(17027738-17027783)
chr5 (174-243)||(23157643-23157712)
chr5 (195-243)||(18872912-18872960)
chr5 (203-232)||(18452680-18452709)
chr5 (203-239)||(7742738-7742774)
chr5 (203-235)||(30072330-30072362)
[»] chr7 (17 HSPs)
chr7 (176-240)||(24596845-24596909)
chr7 (166-241)||(4828996-4829071)
chr7 (174-239)||(8308875-8308940)
chr7 (174-239)||(29544730-29544795)
chr7 (166-238)||(18496776-18496848)
chr7 (193-238)||(20017164-20017209)
chr7 (198-235)||(23125115-23125152)
chr7 (174-238)||(315384-315448)
chr7 (174-238)||(7815534-7815598)
chr7 (203-242)||(21545695-21545734)
chr7 (175-240)||(3487208-3487271)
chr7 (166-239)||(4977653-4977725)
chr7 (174-238)||(1074664-1074728)
chr7 (174-237)||(7494908-7494971)
chr7 (175-234)||(20461486-20461545)
chr7 (193-238)||(22067661-22067706)
chr7 (194-243)||(30405800-30405849)
[»] scaffold0190 (1 HSPs)
scaffold0190 (180-243)||(11544-11606)
[»] chr2 (12 HSPs)
chr2 (176-239)||(18818912-18818975)
chr2 (174-240)||(34063680-34063746)
chr2 (174-239)||(27417102-27417167)
chr2 (174-241)||(17415003-17415070)
chr2 (193-238)||(16593609-16593654)
chr2 (166-239)||(24188179-24188252)
chr2 (176-238)||(18236144-18236206)
chr2 (174-243)||(14921878-14921947)
chr2 (198-239)||(21505002-21505043)
chr2 (194-243)||(22525679-22525728)
chr2 (203-238)||(30998982-30999017)
chr2 (204-238)||(25474248-25474282)
[»] chr8 (21 HSPs)
chr8 (176-241)||(30543970-30544035)
chr8 (166-235)||(32239502-32239571)
chr8 (175-239)||(27097642-27097706)
chr8 (176-243)||(31436676-31436742)
chr8 (175-240)||(11437629-11437694)
chr8 (174-239)||(29291980-29292045)
chr8 (174-241)||(13583355-13583426)
chr8 (175-237)||(28901190-28901252)
chr8 (175-239)||(16052117-16052181)
chr8 (176-239)||(5153968-5154031)
chr8 (194-232)||(12357696-12357734)
chr8 (194-232)||(12358824-12358862)
chr8 (193-239)||(22894390-22894436)
chr8 (174-239)||(11310096-11310160)
chr8 (193-238)||(16054505-16054550)
chr8 (203-238)||(13081803-13081838)
chr8 (174-221)||(24120452-24120499)
chr8 (184-239)||(28291950-28292005)
chr8 (184-239)||(30850949-30851004)
chr8 (193-238)||(28902300-28902345)
chr8 (175-239)||(14424653-14424717)
[»] chr6 (8 HSPs)
chr6 (174-239)||(26499686-26499751)
chr6 (193-238)||(15575135-15575180)
chr6 (193-239)||(17860307-17860353)
chr6 (175-239)||(30355527-30355591)
chr6 (177-232)||(17198664-17198719)
chr6 (194-237)||(24507302-24507345)
chr6 (174-239)||(14924259-14924322)
chr6 (193-234)||(15998725-15998766)
[»] scaffold1149 (1 HSPs)
scaffold1149 (166-239)||(1997-2070)
[»] scaffold0282 (1 HSPs)
scaffold0282 (174-235)||(22453-22514)
[»] scaffold0337 (1 HSPs)
scaffold0337 (194-237)||(2020-2063)
[»] scaffold0188 (1 HSPs)
scaffold0188 (203-238)||(26823-26858)
[»] scaffold0065 (1 HSPs)
scaffold0065 (194-237)||(12456-12499)
[»] scaffold1026 (1 HSPs)
scaffold1026 (206-240)||(1701-1735)
[»] scaffold0836 (1 HSPs)
scaffold0836 (206-240)||(2817-2851)
[»] scaffold0362 (1 HSPs)
scaffold0362 (176-238)||(7830-7892)
[»] scaffold0185 (1 HSPs)
scaffold0185 (195-240)||(2709-2754)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 42 - 243
Target Start/End: Original strand, 52270944 - 52271153
Alignment:
Q  42 cactcttggccatgtccatgcgccccgcgcatggtttggtgtgcagaggcgcatagggcagtagctattagcgctcatgcgcaggggcgcataaggcaac 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52270944 cactcttggccatgtccatgcgccccgcgcatggtttggtgtgcagaggcgcatagggcagtagctattagcgctcatgcgcaggggcgcataaggcaac 52271043  T
Q  142 ccctcttgcacgaattcaac--------acccttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtc 233  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52271044 ccctcttgcacgaattcaacagtttttgacccttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtc 52271143  T
Q  234 ttcaaatacc 243  Q
    ||||||||||    
T  52271144 ttcaaatacc 52271153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 26854160 - 26854226
Alignment:
Q  175 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaata 241  Q
    |||||||| ||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||    
T  26854160 gttcttccatcttgcaatgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaata 26854226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 19257650 - 19257710
Alignment:
Q  179 ttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||    
T  19257650 ttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaa 19257710  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 25665609 - 25665676
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaata 241  Q
    ||||||||||||||||||| |||||||| || |||||| ||||||||||||||||||||||| |||||    
T  25665609 cgttcttccgtcttgcaatgccttggaacttcaaatgatttttcttcactttgtattgtctttaaata 25665676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 25126750 - 25126690
Alignment:
Q  179 ttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||    
T  25126750 ttccgtcttgcaatgccttggaacttgaaatgaattttcttcattttgtattgtattcaaa 25126690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 23506031 - 23505965
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaat 240  Q
    |||| ||| |||||||| |  ||||||| ||||||||||||||||||||||||||||||||||||||    
T  23506031 cgttattctgtcttgcattgtcttggaacttgaaatgaattttcttcactttgtattgtcttcaaat 23505965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 11769833 - 11769898
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    ||||||||||||| | || || | |||| |||||||||||||||||||||||||||||||||||||    
T  11769833 cgttcttccgtctggaaactcataggaacttgaaatgaattttcttcactttgtattgtcttcaaa 11769898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 25494354 - 25494393
Alignment:
Q  200 aatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25494354 aatttgaaatgaattttcttcactttgtattgtcttcaaa 25494393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 23223670 - 23223624
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||| |||| |||||||||||||| ||||||||||||||||||||||    
T  23223670 tcctaggaacttgaaatgaatttttttcactttgtattgtcttcaaa 23223624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 26657732 - 26657686
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||||    
T  26657732 tcctaggaacttgaaatgaattttcttcactttgttttgtcttcaaa 26657686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 30675740 - 30675694
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||| |||| |||||||||||||||||||||||||||| ||||||||    
T  30675740 tcctaggaacttgaaatgaattttcttcactttgtattatcttcaaa 30675694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 12423773 - 12423818
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||||    
T  12423773 tcctaggaacttgaaatgaatttccttcactttgtattgtcttcaa 12423818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 26102332 - 26102267
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||| |||||| ||||||||| || |||| |||||||||| |||  ||||||||||||||||    
T  26102332 cgttcttcagtcttgaaattccttgaaacttgagatgaattttcctcaacttgtattgtcttcaaa 26102267  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 23519608 - 23519672
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||||||||||||   || |||| |||| ||||||| ||||||||||||||| ||||||||||||    
T  23519608 cgttcttccgtctgaaaactcctaggaacttgaaataaattttcttcactttctattgtcttcaa 23519672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 30782011 - 30781971
Alignment:
Q  198 ggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  30782011 ggaacttgaaatcaattttcttcactttgtattgtcttcaa 30781971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 18300861 - 18300907
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||| |||||||||||| | ||||||||||| |||||||||||||||    
T  18300861 tcctaggaatttgaaataatttttcttcactctgtattgtcttcaaa 18300907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 50047431 - 50047386
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||| |||| || |||||||||||||||| ||||||||||||||||    
T  50047431 tcctaggaacttaaaatgaattttcttcattttgtattgtcttcaa 50047386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 21548921 - 21548857
Alignment:
Q  176 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaat 240  Q
    ||||| ||||||| ||| |||||||| || ||||||||||| ||||  ||||||| |||||||||    
T  21548921 ttctttcgtcttgtaatgccttggaacttcaaatgaatttttttcaacttgtattatcttcaaat 21548857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 228018 - 228095
Alignment:
Q  166 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaatacc 243  Q
    ||||| |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  228018 ttttcacccgttcttccgtcttgcaatgtcttggaacttgaaatgaattttcttcactttgtattgtcttcaaatacc 228095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 18474453 - 18474376
Alignment:
Q  166 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaatacc 243  Q
    ||||||| ||||||| ||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||    
T  18474453 ttttcgctcgttctttcgtcttgcaatgcattggaacttgaaatgaattttcttcactttgtattgtcttcaaatacc 18474376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 19542966 - 19543032
Alignment:
Q  177 tcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaatacc 243  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19542966 tctttcgtcttgcaatgccttggaacttgaaatgaattttcttcactttgtattgtcttcaaatacc 19543032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 19219071 - 19219115
Alignment:
Q  195 cttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  19219071 cttggaatttgaaatgaattttattcactttgtattgtcttcaaa 19219115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 23908110 - 23908175
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    ||||||||| | ||| |||||||||||||||| |||||||||||  || |||||||||||||||||    
T  23908110 cgttcttcctttttgaaattccttggaatttggaatgaattttccccaatttgtattgtcttcaaa 23908175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 25883359 - 25883314
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||    
T  25883359 tcctaggaacttgaaatgaattttcttcactttgtattgtcttcaa 25883314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 5632395 - 5632451
Alignment:
Q  187 tgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaatacc 243  Q
    |||||| |||||||| ||||||||||||||||||| ||| |||| ||||||||||||    
T  5632395 tgcaatgccttggaacttgaaatgaattttcttcaatttttattatcttcaaatacc 5632451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 8402392 - 8402459
Alignment:
Q  176 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaatacc 243  Q
    ||||||| |||||||||  | ||||| ||||||||||| ||||||||||| |||| ||||||||||||    
T  8402392 ttcttccatcttgcaatgtcatggaacttgaaatgaatgttcttcactttatattttcttcaaatacc 8402459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 18066053 - 18066007
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||| |||| |||||||||||||||||||||||||||| ||||||||    
T  18066053 tcctaggaagttgaaatgaattttcttcactttgtattttcttcaaa 18066007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 10342062 - 10341997
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    ||||||||||||| | || |||| |||| ||||||||| ||||  |||||||||||||||||||||    
T  10342062 cgttcttccgtctagaaactcctaggaacttgaaatgagtttttctcactttgtattgtcttcaaa 10341997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 11521440 - 11521376
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||||||||||||   || |||| |||| |||||||||||||||||| ||||||||| |||||||    
T  11521440 cgttcttccgtctgaaaactcctaggaacttgaaatgaattttcttcgctttgtattatcttcaa 11521376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 19263772 - 19263804
Alignment:
Q  203 ttgaaatgaattttcttcactttgtattgtctt 235  Q
    |||||||||||||||||||||||||||||||||    
T  19263772 ttgaaatgaattttcttcactttgtattgtctt 19263804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 27415442 - 27415391
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcacttt 225  Q
    ||||||| ||||||| || |||| |||| |||||||||||||||||||||||    
T  27415442 cgttctttcgtcttgaaactcctaggaagttgaaatgaattttcttcacttt 27415391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 1475138 - 1475183
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||| |||| ||||||| |||||||||||||||||||| |||||||    
T  1475138 tcctaggaacttgaaataaattttcttcactttgtattatcttcaa 1475183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 21018136 - 21018087
Alignment:
Q  190 aattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    ||||||| |||| ||||||||||||| ||||| |||||||| ||||||||    
T  21018136 aattcctaggaacttgaaatgaatttccttcattttgtattatcttcaaa 21018087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 31859740 - 31859809
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaatacc 243  Q
    ||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  31859740 cgttcttccgtcttgaaatgccttggaacttgaaataaattttcttcactttgtattgtcttcaaatacc 31859809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 17187443 - 17187381
Alignment:
Q  179 ttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaata 241  Q
    ||||||||||||||  |||| || ||||||||||||||||| |||||||||||||||||||||    
T  17187443 ttccgtcttgcaatgtcttgaaacttgaaatgaattttctttactttgtattgtcttcaaata 17187381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 23353881 - 23353832
Alignment:
Q  186 ttgcaattccttggaatttgaaatgaattttcttcactttgtattgtctt 235  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  23353881 ttgcaatgccttggaacttgaaatgaattttcttcactttgtattgtctt 23353832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 33519305 - 33519240
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||| |||| | ||| ||||||||||||||||||||||||||||  ||||||||||||||||    
T  33519305 cgttcttctgtctggaaatgccttggaatttgaaatgaattttcttcaacttgtattgtcttcaaa 33519240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 17026537 - 17026601
Alignment:
Q  175 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||||| | || |||| |||| ||||||| |||||||||||||||||||||||||||||    
T  17026537 gttcttccgtctggaaactcctaggaacttgaaattaattttcttcactttgtattgtcttcaaa 17026601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 29437736 - 29437674
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttc 236  Q
    |||||||| ||||||| || |||||||| || ||||||| |||||||||||||||||||||||    
T  29437736 cgttcttctgtcttgcgatgccttggaacttcaaatgaagtttcttcactttgtattgtcttc 29437674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 4733031 - 4732970
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtctt 235  Q
    |||||||| |||||| ||| ||||| ||||||||||||||||||||||  ||||||||||||    
T  4733031 cgttcttctgtcttgaaatgccttgaaatttgaaatgaattttcttcaacttgtattgtctt 4732970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 13064709 - 13064632
Alignment:
Q  166 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaatacc 243  Q
    |||| ||||||||||||||||||  || | |||||| ||||||| || ||| ||||||||| ||||||||||||||||    
T  13064709 tttttgcccgttcttccgtcttgtgatgcattggaacttgaaatcaaatttgttcactttgaattgtcttcaaatacc 13064632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 21077506 - 21077446
Alignment:
Q  176 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttc 236  Q
    ||||||| |||| |||| |||||||| |||||||||||||| |||| ||||||||||||||    
T  21077506 ttcttccatctttcaatgccttggaacttgaaatgaattttattcaatttgtattgtcttc 21077446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 240
Target Start/End: Original strand, 20985232 - 20985298
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaat 240  Q
    |||| ||||||| |||| |  |||| ||||| |||||| ||||||||||||||||||||||||||||    
T  20985232 cgtttttccgtcatgcattgtcttgaaatttcaaatgagttttcttcactttgtattgtcttcaaat 20985298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 1695705 - 1695750
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||| |||| |||||||||||||| |||||||||||||||||||||    
T  1695705 tcctaggaacttgaaatgaattttattcactttgtattgtcttcaa 1695750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 5906627 - 5906667
Alignment:
Q  199 gaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  5906627 gaatttgaaatgaattttcttaactttgtattatcttcaaa 5906667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 15192478 - 15192414
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||||||||||||   || |||| |||| |||||||||||| ||||||||||| |||||||||||    
T  15192478 cgttcttccgtctaaaaactcctaggaacttgaaatgaattgtcttcactttgaattgtcttcaa 15192414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 26160029 - 26159983
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttca 221  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||||||    
T  26160029 cgttcttccgtcttgaaat-ccttggaacttgaaatgaattttcttca 26159983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 18444504 - 18444454
Alignment:
Q  175 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcacttt 225  Q
    |||||||||||||||||| ||||| ||   |||||||||||||||||||||    
T  18444504 gttcttccgtcttgcaatgccttgaaaaacgaaatgaattttcttcacttt 18444454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 18898238 - 18898192
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||| |||| ||||||||||||||||| |||||||||||| ||||||    
T  18898238 tcctaggaacttgaaatgaattttctttactttgtattgtattcaaa 18898192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 19602073 - 19602008
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||||  |||| |  |||||||  ||||||||||||||| |||||| |||||||||||||    
T  19602073 cgttcttccgtgctgcattgtcttggaacatgaaatgaattttctccactttttattgtcttcaaa 19602008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 22119895 - 22119831
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||||||||||||  ||||||| ||||||| |||||| | |||||| ||||||| |||||    
T  22119895 cgttcttccgtcttgcaatgacttggaacttgaaattaattttgtacacttt-tattgtcctcaaa 22119831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 27303052 - 27302987
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||||||   || |||| |||| || |||||||||||||||||||| || ||||||||||    
T  27303052 cgttcttccgtctgaaaactcctaggaacttaaaatgaattttcttcactttataatgtcttcaaa 27302987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 5676474 - 5676410
Alignment:
Q  175 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||||| | || |||| | || | |||||||||||||||||  ||||||||||||||||    
T  5676474 gttcttccgtctagaaactcctagtaactcgaaatgaattttcttcatcttgtattgtcttcaaa 5676410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 12111196 - 12111228
Alignment:
Q  203 ttgaaatgaattttcttcactttgtattgtctt 235  Q
    |||||||||||||||||||||||||||| ||||    
T  12111196 ttgaaatgaattttcttcactttgtattatctt 12111228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 51884853 - 51884813
Alignment:
Q  198 ggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||| ||||||| |||||||||||||||||||||| |||||    
T  51884853 ggaacttgaaattaattttcttcactttgtattgtattcaa 51884813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 22643734 - 22643813
Alignment:
Q  164 ccttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaatacc 243  Q
    |||||||||  |||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||||| ||||||||||    
T  22643734 ccttttcgcgtgttctttcgtcttgcaataccttggagtttgaaatgaattttcttcagtttgtattgtattcaaatacc 22643813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 19763725 - 19763790
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    ||||||||| |||| |||| | |||||| |||||||||||||||||||||||||||| ||||||||    
T  19763725 cgttcttccatctttcaatcctttggaacttgaaatgaattttcttcactttgtattatcttcaaa 19763790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 26329909 - 26329970
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtctt 235  Q
    |||||||||||||   || |||| |||| |||||||||||||||||||||||||||||||||    
T  26329909 cgttcttccgtctgaaaactcctaggaacttgaaatgaattttcttcactttgtattgtctt 26329970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 16622516 - 16622581
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    ||||||||| ||| | || ||||  ||| ||||||||||||||||||| |||||||||||||||||    
T  16622516 cgttcttccatctggaaactcctacgaacttgaaatgaattttcttcaatttgtattgtcttcaaa 16622581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 17027783 - 17027738
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||| |||| ||||||| ||||||||||||||||||||||||||||    
T  17027783 tcctaggaaattgaaattaattttcttcactttgtattgtcttcaa 17027738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 23157643 - 23157712
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaatacc 243  Q
    |||||||| |||||||||  |||||||| || ||||||| |||||||||||| | ||||||| |||||||    
T  23157643 cgttcttctgtcttgcaaaaccttggaactttaaatgaactttcttcactttctgttgtctttaaatacc 23157712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 18872912 - 18872960
Alignment:
Q  195 cttggaatttgaaatgaattttcttcactttgtattgtcttcaaatacc 243  Q
    ||||||| || |||||||||||||||| |||||||||||||||| ||||    
T  18872912 cttggaacttcaaatgaattttcttcaatttgtattgtcttcaactacc 18872960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 232
Target Start/End: Original strand, 18452680 - 18452709
Alignment:
Q  203 ttgaaatgaattttcttcactttgtattgt 232  Q
    ||||||||||||||||||||||||||||||    
T  18452680 ttgaaatgaattttcttcactttgtattgt 18452709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 7742738 - 7742774
Alignment:
Q  203 ttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||| || |||||||||||||||||||||||||||    
T  7742738 ttgaaacgatttttcttcactttgtattgtcttcaaa 7742774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 30072362 - 30072330
Alignment:
Q  203 ttgaaatgaattttcttcactttgtattgtctt 235  Q
    |||||||||| ||||||||||||||||||||||    
T  30072362 ttgaaatgaaatttcttcactttgtattgtctt 30072330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 24596845 - 24596909
Alignment:
Q  176 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaat 240  Q
    ||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||    
T  24596845 ttctttcgtcttgcaatgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaat 24596909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 4829071 - 4828996
Alignment:
Q  166 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaata 241  Q
    |||||| |||||||| | ||||  ||| |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  4829071 ttttcggccgttctttcatcttttaatcccttggaacttgaaatgaattatcttcactttgtattgtcttcaaata 4828996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 8308875 - 8308940
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    ||||||||||||||||||| |||||||| |||| |||||| ||||| | |||||||||||||||||    
T  8308875 cgttcttccgtcttgcaataccttggaacttgatatgaatcttctttattttgtattgtcttcaaa 8308940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 29544795 - 29544730
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||||||   || |||| |||| |||||||||||||||||||||||||||||||||||||    
T  29544795 cgttcttccgtctgaaaactcctaggaacttgaaatgaattttcttcactttgtattgtcttcaaa 29544730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 18496848 - 18496776
Alignment:
Q  166 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||||| |||||||| ||||||| ||| |||||||| |||||||||||||||||||  ||||||| |||||||    
T  18496848 ttttcgaccgttcttacgtcttgaaatgccttggaacttgaaatgaattttcttcatcttgtattttcttcaa 18496776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 20017209 - 20017164
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||    
T  20017209 tcctaggaacttgaaatgaattttcttcactttgtattgtcttcaa 20017164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 23125152 - 23125115
Alignment:
Q  198 ggaatttgaaatgaattttcttcactttgtattgtctt 235  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23125152 ggaatttgaaatgaattttcttcactttgtattgtctt 23125115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 315448 - 315384
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    ||||||| ||||| | || |||| |||| |||||||||||||| |||||||||||||||||||||    
T  315448 cgttctttcgtctggaaactcctaggaacttgaaatgaattttattcactttgtattgtcttcaa 315384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 7815598 - 7815534
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||||||||||||   || ||||  ||| ||||||||||||||||||||||||||||||||||||    
T  7815598 cgttcttccgtctgaaaactcctatgaacttgaaatgaattttcttcactttgtattgtcttcaa 7815534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 21545695 - 21545734
Alignment:
Q  203 ttgaaatgaattttcttcactttgtattgtcttcaaatac 242  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  21545695 ttgaaatgaattttcttcactttttattgtcttcaaatac 21545734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 3487208 - 3487271
Alignment:
Q  175 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaat 240  Q
    ||||||||||||||||||  ||||||| || |||||||  ||||||||||||||||||||| ||||    
T  3487208 gttcttccgtcttgcaatgtcttggaacttcaaatgaa--ttcttcactttgtattgtcttaaaat 3487271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 4977653 - 4977725
Alignment:
Q  166 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||||||||||||||||  || |||||| | || ||||||||||| |||| |||||||| ||||||||    
T  4977653 ttttcgcccgttcttccgtcttgtgatgccttgg-acttcaaatgaattttgttcattttgtattttcttcaaa 4977725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 1074728 - 1074664
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    ||||||||||||||| |||  ||||||| ||||||| | |||||||||  |||||||||||||||    
T  1074728 cgttcttccgtcttgaaatgtcttggaacttgaaattacttttcttcatcttgtattgtcttcaa 1074664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 7494971 - 7494908
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttca 237  Q
    ||||||||||||| | || |||| | |  ||||||| |||||||||||||||||||||||||||    
T  7494971 cgttcttccgtctggaaactcctagaatcttgaaataaattttcttcactttgtattgtcttca 7494908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 20461486 - 20461545
Alignment:
Q  175 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtct 234  Q
    ||||||| |||||||||| || || || |||||| |||||| ||||||||||||||||||    
T  20461486 gttcttcagtcttgcaatgccctgaaacttgaaaggaatttacttcactttgtattgtct 20461545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 22067661 - 22067706
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||| |||| |||||||||||| | |||||||||||||||||||||    
T  22067661 tcctaggaacttgaaatgaattcttttcactttgtattgtcttcaa 22067706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 30405849 - 30405800
Alignment:
Q  194 ccttggaatttgaaatgaattttcttcactttgtattgtcttcaaatacc 243  Q
    ||||||||||| ||| ||||| | ||||||||||||||| ||||||||||    
T  30405849 ccttggaatttcaaacgaattgtattcactttgtattgtattcaaatacc 30405800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 11544 - 11606
Alignment:
Q  180 tccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaatacc 243  Q
    ||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||    
T  11544 tccgtcttgcaatgccttggactt-gaaatgaattttcttcactttgtattgtcttcaaatacc 11606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 18818975 - 18818912
Alignment:
Q  176 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||||||||||  ||||||| ||||| |||||||||||||||||||||||||||||||    
T  18818975 ttcttccgtcttgcaatgtcttggaacttgaattgaattttcttcactttgtattgtcttcaaa 18818912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 240
Target Start/End: Original strand, 34063680 - 34063746
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaat 240  Q
    |||||||||||||  |||| |||||||| || |||||||||||||||||||||||||||||||||||    
T  34063680 cgttcttccgtctcacaatgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaat 34063746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 27417102 - 27417167
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    ||||||||||||| | || ||||||||| |||||||||||||||||||||||||||||| ||||||    
T  27417102 cgttcttccgtctggaaactccttggaacttgaaatgaattttcttcactttgtattgttttcaaa 27417167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 17415003 - 17415070
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaata 241  Q
    |||||||||||||||||||  ||| ||| ||||||||||||||||||||||| | |||||||||||||    
T  17415003 cgttcttccgtcttgcaatgtcttagaacttgaaatgaattttcttcactttttgttgtcttcaaata 17415070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 16593609 - 16593654
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||    
T  16593609 tcctaggaacttgaaatgaattttcttcactttgtattgtcttcaa 16593654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 24188252 - 24188179
Alignment:
Q  166 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    ||||||||||||| |||||||| | |  |||||| | ||| ||||||| |||||||||||||||||||||||||    
T  24188252 ttttcgcccgttcctccgtctttccaggccttggcacttggaatgaatcttcttcactttgtattgtcttcaaa 24188179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 18236144 - 18236206
Alignment:
Q  176 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    ||||||||||||  ||| |||| ||| |||||||||||||||||||  |||||||||||||||    
T  18236144 ttcttccgtctttaaatgcctttgaacttgaaatgaattttcttcatcttgtattgtcttcaa 18236206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 14921878 - 14921947
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaatacc 243  Q
    |||||||| ||||||  || |||||||| || |||||| |||||||||||||||||||||| || |||||    
T  14921878 cgttcttctgtcttgtgatgccttggaaattcaaatgatttttcttcactttgtattgtctacatatacc 14921947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 21505002 - 21505043
Alignment:
Q  198 ggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  21505002 ggaatttgaaatgaattttcttcaacttgtattgtcttcaaa 21505043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 22525679 - 22525728
Alignment:
Q  194 ccttggaatttgaaatgaattttcttcactttgtattgtcttcaaatacc 243  Q
    ||||| || ||||||| ||||||||||||||||| |||||||||||||||    
T  22525679 ccttgaaacttgaaataaattttcttcactttgtgttgtcttcaaatacc 22525728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 30999017 - 30998982
Alignment:
Q  203 ttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||||||||||||||| |||||||||||||||||||    
T  30999017 ttgaaatgaattttctccactttgtattgtcttcaa 30998982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 25474282 - 25474248
Alignment:
Q  204 tgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||||||||||||||||||||| ||||||||||||    
T  25474282 tgaaatgaattttcttcactttatattgtcttcaa 25474248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 30544035 - 30543970
Alignment:
Q  176 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaata 241  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||    
T  30544035 ttcttccgccttgcaatgccttggaacttgaaatgaattttcttcactttatattgtctttaaata 30543970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 32239571 - 32239502
Alignment:
Q  166 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtctt 235  Q
    |||||||||||| ||| |||||||||| ||||| || ||||||||||||||||||||||| |||||||||    
T  32239571 ttttcgcccgtttttctgtcttgcaatgccttgaaacttgaaatgaattttcttcactttttattgtctt 32239502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 27097642 - 27097706
Alignment:
Q  175 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||||||||||| |||||||| ||||| |||||||||||||  ||||||||||||||||    
T  27097642 gttcttccgtcttgcaatgccttggaacttgaattgaattttcttcaacttgtattgtcttcaaa 27097706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 31436742 - 31436676
Alignment:
Q  176 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaatacc 243  Q
    |||||| |||||||||| |||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  31436742 ttcttctgtcttgcaatgccttggaacttgaaat-aatttttttcactttgtattgtcttcaaatacc 31436676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 11437694 - 11437629
Alignment:
Q  175 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaat 240  Q
    |||||||||||||||||| | |||||| || ||||||||| |||||||| ||||||||||||||||    
T  11437694 gttcttccgtcttgcaatgctttggaacttcaaatgaattatcttcactctgtattgtcttcaaat 11437629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 29292045 - 29291980
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||||||||||||   ||||||||||||||||||||| |||||||| | |||||||||||    
T  29292045 cgttcttccgtcttgcaatgaattggaatttgaaatgaatttttttcactttctgttgtcttcaaa 29291980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 13583355 - 13583426
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaa----ttttcttcactttgtattgtcttcaaata 241  Q
    ||||||||||||||||||| |||||||| || |||||||    |||| ||||||||||||||||||||||||    
T  13583355 cgttcttccgtcttgcaataccttggaacttcaaatgaatttttttttttcactttgtattgtcttcaaata 13583426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 28901190 - 28901252
Alignment:
Q  175 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttca 237  Q
    |||||||||||| | || |||| |||  |||||||||||||||||||||||||||||||||||    
T  28901190 gttcttccgtctagaaactcctaggagcttgaaatgaattttcttcactttgtattgtcttca 28901252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 16052117 - 16052181
Alignment:
Q  175 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||||| | || |||  |||| ||||||||||||||||||| |||||||||||||||||    
T  16052117 gttcttccgtctagaaactccaaggaacttgaaatgaattttcttcattttgtattgtcttcaaa 16052181  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 5154031 - 5153968
Alignment:
Q  176 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||||||||||  ||||||| |||||||||||||| ||||  || |||||||||||||    
T  5154031 ttcttccgtcttgcaatgtcttggaacttgaaatgaattttattcatgttatattgtcttcaaa 5153968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 12357734 - 12357696
Alignment:
Q  194 ccttggaatttgaaatgaattttcttcactttgtattgt 232  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  12357734 ccttggaatttgaaatgaattttcttcactttttattgt 12357696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 12358862 - 12358824
Alignment:
Q  194 ccttggaatttgaaatgaattttcttcactttgtattgt 232  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  12358862 ccttggaatttgaaatgaattttcttcactttttattgt 12358824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 22894390 - 22894436
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    ||||||||| || ||| ||||||||||||||||||||||||||||||    
T  22894390 tccttggaacttcaaaagaattttcttcactttgtattgtcttcaaa 22894436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 11310096 - 11310160
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    ||||||||||||| | || |||| |||| ||||||| |||||||||||||||||||||| ||||||    
T  11310096 cgttcttccgtctagaaactcctaggaacttgaaat-aattttcttcactttgtattgttttcaaa 11310160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 16054550 - 16054505
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||| |||| |||||||||||||||||||||||||||| |||||||    
T  16054550 tcctaggaacttgaaatgaattttcttcactttgtattttcttcaa 16054505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 13081803 - 13081838
Alignment:
Q  203 ttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    ||||||||||||||||||| ||||||||||||||||    
T  13081803 ttgaaatgaattttcttcattttgtattgtcttcaa 13081838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 24120499 - 24120452
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttca 221  Q
    ||||||||||||| | ||||||| |||| |||||||||||||||||||    
T  24120499 cgttcttccgtctggaaattcctaggaacttgaaatgaattttcttca 24120452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 28291950 - 28292005
Alignment:
Q  184 tcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||  ||||||| |||||||  |||||||||| |||||||||||||||||    
T  28291950 tcttgcaatggcttggaacttgaaatttattttcttcattttgtattgtcttcaaa 28292005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 30850949 - 30851004
Alignment:
Q  184 tcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||  ||||||| ||||||| |||||||||||||||||||| | ||||||    
T  30850949 tcttgcaatgacttggaacttgaaattaattttcttcactttgtattatattcaaa 30851004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 28902345 - 28902300
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||| |||| || ||||||||||| |||||||||||||||||||||    
T  28902345 tcctaggaacttaaaatgaattttattcactttgtattgtcttcaa 28902300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 14424653 - 14424717
Alignment:
Q  175 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    ||||||||||||||||||  ||| ||| |  ||||||||||||||||| ||| ||||| ||||||    
T  14424653 gttcttccgtcttgcaatatcttagaactataaatgaattttcttcacattgaattgtgttcaaa 14424717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 26499686 - 26499751
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||| |||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||    
T  26499686 cgttgttccgtcttgcaatgccttgaaacttgaaatgaattttctttactttgtattgtcttcaaa 26499751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 15575180 - 15575135
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||    
T  15575180 tcctaggaacttgaaatgaattttcttcactttgtattgtcttcaa 15575135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 17860307 - 17860353
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||| |||| |||||||||||||||||||||||||||||||| ||||    
T  17860307 tcctaggaacttgaaatgaattttcttcactttgtattgtctacaaa 17860353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 30355591 - 30355527
Alignment:
Q  175 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    |||||||||||| | || ||||  ||| |||||||||||||| |||||||| |||||||||||||    
T  30355591 gttcttccgtctggaaactcctgtgaacttgaaatgaattttattcactttttattgtcttcaaa 30355527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 17198664 - 17198719
Alignment:
Q  177 tcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgt 232  Q
    ||||| |||||||||| |||||||| || |||| |||||| |||||||||||||||    
T  17198664 tcttctgtcttgcaatgccttggaactttaaataaattttattcactttgtattgt 17198719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 24507302 - 24507345
Alignment:
Q  194 ccttggaatttgaaatgaattttcttcactttgtattgtcttca 237  Q
    |||||||| ||||||| |||||||||||||||||||| ||||||    
T  24507302 ccttggaacttgaaataaattttcttcactttgtattttcttca 24507345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 14924259 - 14924322
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    ||||||||||||||||||| |||| |||  ||||||||||||  ||||  ||||||||||||||||    
T  14924259 cgttcttccgtcttgcaatgccttcgaacctgaaatgaattt--ttcatcttgtattgtcttcaaa 14924322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 15998766 - 15998725
Alignment:
Q  193 tccttggaatttgaaatgaattttcttcactttgtattgtct 234  Q
    |||| |||| ||||||||||||| ||||||||||||||||||    
T  15998766 tcctaggaacttgaaatgaatttgcttcactttgtattgtct 15998725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 2070 - 1997
Alignment:
Q  166 ttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaa 239  Q
    ||||| |||||||||| |||||||||    |||||| ||||||||||||||||| |||||||||||||||||||    
T  2070 ttttcacccgttcttctgtcttgcaaagtattggaacttgaaatgaattttctttactttgtattgtcttcaaa 1997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 22453 - 22514
Alignment:
Q  174 cgttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtctt 235  Q
    ||||||||| ||| | || |||| |||| |||||||||||||||||||| ||||||||||||    
T  22453 cgttcttccctctggaaaatcctaggaacttgaaatgaattttcttcaccttgtattgtctt 22514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 2063 - 2020
Alignment:
Q  194 ccttggaatttgaaatgaattttcttcactttgtattgtcttca 237  Q
    |||||||| ||||||| |||||||||||||||||||| ||||||    
T  2063 ccttggaacttgaaataaattttcttcactttgtattttcttca 2020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 26823 - 26858
Alignment:
Q  203 ttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||||| |||||||||||||||||||||||||||||    
T  26823 ttgaaacgaattttcttcactttgtattgtcttcaa 26858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 12499 - 12456
Alignment:
Q  194 ccttggaatttgaaatgaattttcttcactttgtattgtcttca 237  Q
    |||||||| ||||||| |||||||||||||||||||| ||||||    
T  12499 ccttggaacttgaaataaattttcttcactttgtattttcttca 12456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 1701 - 1735
Alignment:
Q  206 aaatgaattttcttcactttgtattgtcttcaaat 240  Q
    |||||||||||||||||||||||||||| ||||||    
T  1701 aaatgaattttcttcactttgtattgtcatcaaat 1735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 2851 - 2817
Alignment:
Q  206 aaatgaattttcttcactttgtattgtcttcaaat 240  Q
    |||||||||||||||||||||||||||| ||||||    
T  2851 aaatgaattttcttcactttgtattgtcatcaaat 2817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 7892 - 7830
Alignment:
Q  176 ttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaa 238  Q
    |||||||||||   || |||| |||| ||||||||||||||||| |||||||| |||||||||    
T  7892 ttcttccgtctgaaaactcctaggaacttgaaatgaattttcttgactttgtactgtcttcaa 7830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 2754 - 2709
Alignment:
Q  195 cttggaatttgaaatgaattttcttcactttgtattgtcttcaaat 240  Q
    |||||||  |||||||| ||||||||||| ||||||||||||||||    
T  2754 cttggaacatgaaatgagttttcttcactctgtattgtcttcaaat 2709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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