View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11428_high_23 (Length: 241)
Name: NF11428_high_23
Description: NF11428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11428_high_23 |
 | |
|
| [»] scaffold0891 (1 HSPs) |
| | |
|
| [»] scaffold2086 (1 HSPs) |
| | |
|
| [»] scaffold1996 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 35848547 - 35848321
Alignment:
| Q |
1 |
atgggtgaagagacttcatctttgcctcaagagtttctagatgaggtaatggatagaggatacataactagttggtgctatcaagatcaagtgctttctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35848547 |
atgggtgaagagacttcatctttgcctcaagagtttctagatgaagttaaggatagaggatacataactagttggtgctatcaagatcaagtgctttctc |
35848448 |
T |
|
| Q |
101 |
atccatcagttgggggattcttaactcattgtggttggaattctacacttgaagcaatttcttatggtgtgcctactatatgttggcctttctttggtga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
35848447 |
atccatcagttgggggattcttgactcattgtggttggaattctacacttgaaactatttcctatggtgtgcctactatttgttggcctttctttgttga |
35848348 |
T |
|
| Q |
201 |
gcaacaaacaaattgtaggtatttatg |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
35848347 |
gcaacaaacaaattgtaggtatttatg |
35848321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 35866218 - 35865992
Alignment:
| Q |
1 |
atgggtgaagagacttcatctttgcctcaagagtttctagatgaggtaatggatagaggatacataactagttggtgctatcaagatcaagtgctttctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35866218 |
atgggtgaagagacttcatctttgcctcaagagtttctagatgaagttaaggatagaggatacataactagttggtgctatcaagatcaagtgctttctc |
35866119 |
T |
|
| Q |
101 |
atccatcagttgggggattcttaactcattgtggttggaattctacacttgaagcaatttcttatggtgtgcctactatatgttggcctttctttggtga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
35866118 |
atccatcagttgggggattcttgactcattgtggttggaattctacacttgaaactatttcctatggtgtgcctactatttgttggcctttctttgctga |
35866019 |
T |
|
| Q |
201 |
gcaacaaacaaattgtaggtatttatg |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
35866018 |
gcaacaaacaaattgtaggtatttatg |
35865992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 35774766 - 35774540
Alignment:
| Q |
1 |
atgggtgaagagacttcatctttgcctcaagagtttctagatgaggtaatggatagaggatacataactagttggtgctatcaagatcaagtgctttctc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35774766 |
atgggtgaagagacttcaactttgccacaagattttctagatgaggttaaggatagaggatacataactagttggtgctatcaagatcaagtgctttctc |
35774667 |
T |
|
| Q |
101 |
atccatcagttgggggattcttaactcattgtggttggaattctacacttgaagcaatttcttatggtgtgcctactatatgttggcctttctttggtga |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
35774666 |
atccatcaattgggggattcttaactcattgtggttggaattctacacttgaaactatttcctatggtgtgcctactatttgttggcctttctttgctga |
35774567 |
T |
|
| Q |
201 |
gcaacaaacaaattgtaggtatttatg |
227 |
Q |
| |
|
|||||||||||||||| |||||||||| |
|
|
| T |
35774566 |
gcaacaaacaaattgttggtatttatg |
35774540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 35754643 - 35754417
Alignment:
| Q |
1 |
atgggtgaagagacttcatctttgcctcaagagtttctagatgaggtaatggatagaggatacataactagttggtgctatcaagatcaagtgctttctc |
100 |
Q |
| |
|
||||||||||| | |||| ||||||| ||||| ||||||||||| || | |||||||||||||||||||||||||||| ||||| ||||||||| ||| |
|
|
| T |
35754643 |
atgggtgaagaaatttcaactttgccacaagattttctagatgaagttaaggatagaggatacataactagttggtgcatgcaagaccaagtgcttgctc |
35754544 |
T |
|
| Q |
101 |
atccatcagttgggggattcttaactcattgtggttggaattctacacttgaagcaatttcttatggtgtgcctactatatgttggcctttctttggtga |
200 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||| ||||| | ||||||| ||||| |||||||| |||||||| ||||||| ||| |
|
|
| T |
35754543 |
atccatcagttggggtttttctaactcattgtggttggaattctacaattgaaaccatttcttcaggtgttcctactatttgttggcccttctttgctga |
35754444 |
T |
|
| Q |
201 |
gcaacaaacaaattgtaggtatttatg |
227 |
Q |
| |
|
||||||||||||||| | ||||||||| |
|
|
| T |
35754443 |
gcaacaaacaaattgcaagtatttatg |
35754417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 222
Target Start/End: Complemental strand, 35735716 - 35735583
Alignment:
| Q |
89 |
aagtgctttctcatccatcagttgggggattcttaactcattgtggttggaattctacacttgaagcaatttcttatggtgtgcctactatatgttggcc |
188 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| |||||| | ||| ||||| || ||||||| |
|
|
| T |
35735716 |
aagtacttgctcatccatcagttggggtatttttaactcattgtggttggaattcatcacttgagagtatttctgaaggtaagcctatgattggttggcc |
35735617 |
T |
|
| Q |
189 |
tttctttggtgagcaacaaacaaattgtaggtat |
222 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
35735616 |
tttctttgctgagcaacaaacaaattgtaggtat |
35735583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3325 - 3551
Alignment:
| Q |
1 |
atgggtgaagagacttcatctttgcctcaagagtttctagatgaggtaatggatagaggatacataactagttggtgctatcaagatcaagtgctttctc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||| || | ||||| ||||||||||||||||||||||| ||||| |||||||| ||| |
|
|
| T |
3325 |
atgggtgaagagacttcaactttgccacaagagtttctagatgaagttaaggataaaggatacataactagttggtgctcccaagacgaagtgcttgctc |
3424 |
T |
|
| Q |
101 |
atccatcagttgggggattcttaactcattgtggttggaattctacacttgaagcaatttcttatggtgtgcctactatatgttggcctttctttggtga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
3425 |
atccatcagttgggggattcttgactcattgtggttggaattctacacttgaaactatttcttatggtgtgcctactatttgttggcctttctttgctga |
3524 |
T |
|
| Q |
201 |
gcaacaaacaaattgtaggtatttatg |
227 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
3525 |
acaacaaacaaattgtaggtatttatg |
3551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 200 - 414
Alignment:
| Q |
13 |
acttcatctttgcctcaagagtttctagatgaggtaatggatagaggatacataactagttggtgctatcaagatcaagtgctttctcatccatcagttg |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||| |
|
|
| T |
200 |
acttcatctttgccacaagagtttctagatgaggtaaaagatagaggatacataactagttggtgctttcaagatcaagtgcttgctcatccatcggttg |
299 |
T |
|
| Q |
113 |
ggggattcttaactcattgtggttggaattctacacttgaagcaatttcttatggtgtgcctactatatgttggcctttctttggtgagcaacaaacaaa |
212 |
Q |
| |
|
| || ||| |||||||||||||||||||||||||||||||||| || |||| |||| |||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
300 |
gagggttcctaactcattgtggttggaattctacacttgaagctatatcttctggtatgcctactatttgttggcctttctttgctgagcaacaaacaaa |
399 |
T |
|
| Q |
213 |
ttgtaggtatttatg |
227 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
400 |
ttgtaggtatttatg |
414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 200 - 414
Alignment:
| Q |
13 |
acttcatctttgcctcaagagtttctagatgaggtaatggatagaggatacataactagttggtgctatcaagatcaagtgctttctcatccatcagttg |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||| |
|
|
| T |
200 |
acttcatctttgccacaagagtttctagatgaggtaaaagatagaggatacataactagttggtgctttcaagatcaagtgcttgctcatccatcggttg |
299 |
T |
|
| Q |
113 |
ggggattcttaactcattgtggttggaattctacacttgaagcaatttcttatggtgtgcctactatatgttggcctttctttggtgagcaacaaacaaa |
212 |
Q |
| |
|
| || ||| |||||||||||||||||||||||||||||||||| || |||| |||| |||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
300 |
gagggttcctaactcattgtggttggaattctacacttgaagctatatcttctggtatgcctactatttgttggcctttctttgctgagcaacaaacaaa |
399 |
T |
|
| Q |
213 |
ttgtaggtatttatg |
227 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
400 |
ttgtaggtatttatg |
414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 41518139 - 41518187
Alignment:
| Q |
110 |
ttgggggattcttaactcattgtggttggaattctacacttgaagcaat |
158 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
41518139 |
ttggaggattcttaacacattgtggttggaattctactcttgaagcaat |
41518187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 41537118 - 41537166
Alignment:
| Q |
110 |
ttgggggattcttaactcattgtggttggaattctacacttgaagcaat |
158 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
41537118 |
ttggaggattcttaacacattgtggttggaattctactcttgaagcaat |
41537166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 41511448 - 41511492
Alignment:
| Q |
110 |
ttgggggattcttaactcattgtggttggaattctacacttgaag |
154 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||| |||||||||| |
|
|
| T |
41511448 |
ttggtggatttttgactcattgtggttggaattcaacacttgaag |
41511492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 48532790 - 48532834
Alignment:
| Q |
110 |
ttgggggattcttaactcattgtggttggaattctacacttgaag |
154 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
48532790 |
ttggaggattcttaacacattgtggatggaattcaacacttgaag |
48532834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 8136565 - 8136517
Alignment:
| Q |
110 |
ttgggggattcttaactcattgtggttggaattctacacttgaagcaat |
158 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
8136565 |
ttggaggattcttaacacattgtggttggaattctacaatggaagcaat |
8136517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 845044 - 845012
Alignment:
| Q |
121 |
ttaactcattgtggttggaattctacacttgaa |
153 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
845044 |
ttaactcattgtggttggaattcaacacttgaa |
845012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 870328 - 870296
Alignment:
| Q |
121 |
ttaactcattgtggttggaattctacacttgaa |
153 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
870328 |
ttaactcattgtggttggaattcaacacttgaa |
870296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 20155238 - 20155298
Alignment:
| Q |
94 |
ctttctcatccatcagttgggggattcttaactcattgtggttggaattctacacttgaag |
154 |
Q |
| |
|
||||||||||| ||| |||| |||||||| || |||||||| |||||||| ||| |||||| |
|
|
| T |
20155238 |
ctttctcatccttcaattggaggattcttgacacattgtggatggaattcaacaattgaag |
20155298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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