View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11428_high_24 (Length: 239)
Name: NF11428_high_24
Description: NF11428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11428_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 52113192 - 52112971
Alignment:
| Q |
1 |
cctcttcaccggaactttcatgccgtcaacagaactcactggtggttaccgtatcctctcttaccttgatccaaccgaaccaaaacacgaccaactcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52113192 |
cctcttcaccggaactttcatgccgtcaacagaactcactggtggttaccgtatcctctcttaccttgatccaaccgaaccaaaacacgaccaactcaaa |
52113093 |
T |
|
| Q |
101 |
cgccttcttttcttcctcctcaagtcacgtagtagccactttatccctgagttccactcatcttacacaaacctctttaacactctagaaaaagagcttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52113092 |
cgccttcttttcttcctcctcaagtcacgtagtagccactttatccctgagtttcactcatcttacacaaacctctttaacactctagaaaaagagcttg |
52112993 |
T |
|
| Q |
201 |
caaaaacaggatatgcaatttt |
222 |
Q |
| |
|
||||||||||| |||||||||| |
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| T |
52112992 |
caaaaacaggaaatgcaatttt |
52112971 |
T |
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