View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11428_high_4 (Length: 483)
Name: NF11428_high_4
Description: NF11428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11428_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 468
Target Start/End: Original strand, 45242910 - 45243377
Alignment:
| Q |
11 |
cagagataagctcgtcaaaatgatgatttaggagtgaggatatataaaataacgaagaggnnnnnnnntcaattcatatcgagattctttctttaactaa |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
45242910 |
cagaaataagctcgtcaaaatgatgatttaggagtgaggatatataaaataacgaagaggaaaaaaaatcaattcatatcgaggttctttctttaactaa |
45243009 |
T |
|
| Q |
111 |
atttatatgaaaatgaattgttgtctagcttaatgcttttcttcgtcacacacaaaacatacactctttattgtttctttcgaaattcaacatgcagtca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45243010 |
atttatatgaaaatgaattgttgtctagcttaatgcttttcttcgtcacacacacaacatacactctttattgtttctttcgaaattcaacatgcagtca |
45243109 |
T |
|
| Q |
211 |
ttttcaaaatcatgtaaaaatatgtacataaacaaacgatacaaaaagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45243110 |
ttttcaaaatcatgtaaaaatatgtacataaacaaacgacacaaaaagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaa |
45243209 |
T |
|
| Q |
311 |
atacatacaccataatatatga--------tgtttatccctatctctcttattctttatcttctagaacttacagata----nnnnnnnnnnnnnnnnnc |
398 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45243210 |
atacatacaccataaaatatgatacagatgtgtttatccctatctctcttattctttatcttctagaacttacagatatttttttttaaaaaaaaaaaac |
45243309 |
T |
|
| Q |
399 |
atgcaaaaaccaatggatactgtacctgatatcaaaattttgatgtccagacatcatttctcaatcaaaa |
468 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45243310 |
atgcaaaaaccaatggatac--aacctgatatcaaaattttgatgtccagacatgatttctcaatcaaaa |
45243377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 463
Target Start/End: Original strand, 45237442 - 45237480
Alignment:
| Q |
425 |
tgatatcaaaattttgatgtccagacatcatttctcaat |
463 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
45237442 |
tgatatcaaaactttgatgtccaaacatcatttctcaat |
45237480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 236 - 324
Target Start/End: Complemental strand, 8576934 - 8576845
Alignment:
| Q |
236 |
acataaacaaacgatacaa-aaagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaaatacatacaccata |
324 |
Q |
| |
|
|||||||||||| | |||| |||| |||||| ||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
8576934 |
acataaacaaactacacaagaaaggtgattcaatttgacctctaacaaaatgcagttgtgttatttcaacatcaaaatacatacaccata |
8576845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 8580242 - 8580177
Alignment:
| Q |
79 |
tcaattcatatcgagattctttctttaactaaatttatatgaaaatgaattgttgtctagcttaat |
144 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||| ||||||| || ||||||| |||||| |
|
|
| T |
8580242 |
tcaattcatattgatattctttctttaacctaatttataagaaaatggatcattgtctaacttaat |
8580177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University