View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11428_high_8 (Length: 398)
Name: NF11428_high_8
Description: NF11428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11428_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 39776576 - 39776206
Alignment:
| Q |
18 |
tgaccaaaagcaaaggaaattattaacaagaaaacaatggaaggaaattgtgctagactgaaatgcagtaataatagacatacagattcatccaaattcc |
117 |
Q |
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| T |
39776576 |
tgaccaaaagcaaaggaaattattaacaagaaaacaatggaaggaaattgtgctagactgaaatgcagtaataatagacatacagattcatccaaattcc |
39776477 |
T |
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| Q |
118 |
taaaaatgtggaaactgccaacaaagaaaatggtttatggacccaaaataattaaagctaaagcttttatcattcaataacaagtcagtccaaattttta |
217 |
Q |
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| T |
39776476 |
taaaaatgtggaacctgccaacaaagaaaatggtttatggacccaaaataattaaagctaaagcttttatcattcaataacaagtcagtccaaattttta |
39776377 |
T |
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| Q |
218 |
gttagaattatttaaataaatgagtcagattcaattcatctaattttttcacaagtcaaactcaagaattggtccggcttaactcgttttaaccaataat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39776376 |
gttagaattatttaaataaatgagtcagattcaattcatctaattttttcacaagtcaaactcaagaattggtccggcttaactcgtttgaaccaataat |
39776277 |
T |
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| Q |
318 |
atcaatgatcaagtcatccannnnnnncccaagttaaactcaaactttaagtatttgtctcgactcctatg |
388 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39776276 |
atcaatgatcaagtcatccatttttttcccaagttaaactcaaactttaagtatttgtctcgactcctatg |
39776206 |
T |
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