View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11428_low_1 (Length: 786)
Name: NF11428_low_1
Description: NF11428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11428_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 648; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 14 - 769
Target Start/End: Complemental strand, 31042339 - 31041579
Alignment:
| Q |
14 |
gaaccagcatgacatatatagtgtgacaagaatgcctatcatgaaaattaataatgaagatgcactggtgtagaaattcagcaaggatggaaaatataaa |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31042339 |
gaaccagcatgacatatatagtgtgacaagaatgcctatcatgcaaattaataatgaagatgcactggtgtagaaattcagcaaggatggaaaatataaa |
31042240 |
T |
|
| Q |
114 |
gtttggttggcctatagtccctcatagattcatcactatcaagctgtcagtactgcgacgttttggtggaggatgactggcattgttttctcagattatg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31042239 |
gtttggttggcctatagtccctcatagattcatcactatcaagctgtcagtactgcgacgttttgatggaggatgactggcattgttttctcagattatg |
31042140 |
T |
|
| Q |
214 |
gcattatggaaagcttctttctcatgaagctgaatgtatagca---ttatggcaagcattagaatggttgactgacatatcagaggaactagtgttactg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31042139 |
gcattatggaaagcttctttctcatgaagctgaatgtatagcattattatggcaagcattagaatggttgactgacatatcagaggaactagtgttactg |
31042040 |
T |
|
| Q |
311 |
ttaatagaaatggaatgtcaacttgtagttcatagtgacatcaatgaatttggtgtcatcattaacaaatgtagatccattctcaacactag-nnnnnnn |
409 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31042039 |
ttaatagatatggaatgtcaacttgtagttcatagtgacatcaatgaatttggtgtcatcattaacaaatgtagatccattctcaactctagaaaaaaaa |
31041940 |
T |
|
| Q |
410 |
nnntataaagcttgaaagaacctttttatagctgtctttttcaaggtgttcaccatagtgacattgtc-gatannnnnnnggttaagatgccattcgata |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
31041939 |
atatataaagcttgaaagaacctttttatagctgtctttttcaaggtgttcaccatagtgacattgtctgatatttttttggttaagatgccattcgata |
31041840 |
T |
|
| Q |
509 |
tgttctaagataaatgtcaaatattccagtataccttatcaactatcaagtgtattcaagttaagcaacatcattttattacaatatttttcctataaag |
608 |
Q |
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| T |
31041839 |
tgttctaagataaatgtcaaatactccagtataccttatcaactatcaagtgtattcaagttaagcaacatcattttattacaatatttttccaataaag |
31041740 |
T |
|
| Q |
609 |
acgtagattagaacgttattagttcgtgatttagagtctgaaacattggactcttctacttatacttcagagttccaacttgcttgtcatggctgtaccg |
708 |
Q |
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| T |
31041739 |
acgtagattagaacgttattagttcgtgatttagagtctgaaacattgcactcttctacttatacttcagagttccaacttgcttgtcatggctgtaccg |
31041640 |
T |
|
| Q |
709 |
cagtcagtgccaccattgatagatcacaaagcacatttcattgtccgacattagcgataag |
769 |
Q |
| |
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| T |
31041639 |
cggtcagtgccaccattgatagatcacaaagcacatttcattgtccgacattagcgataag |
31041579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 653 - 770
Target Start/End: Complemental strand, 31067548 - 31067432
Alignment:
| Q |
653 |
attggactcttctacttatacttcagagttccaacttgcttgtcatggctgtaccgcagtcagtgccaccattgatagatcacaaagcacatttcattgt |
752 |
Q |
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|||| ||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||||| |
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| T |
31067548 |
attgaactcttctacttaaagttcagagttccaacttgcttgtcatggctgtacggcactcagagccaccattgacagatcacaaagcacatttcattgt |
31067449 |
T |
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| Q |
753 |
ccgacattagcgataagt |
770 |
Q |
| |
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||||||||| |||||| |
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| T |
31067448 |
-tgacattagcaataagt |
31067432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 349 - 474
Target Start/End: Complemental strand, 31068767 - 31068640
Alignment:
| Q |
349 |
catcaatgaatttggtgtcatcattaacaaatgtagatccattctcaacactagnnnnnnnnnn--tataaagcttgaaagaacctttttatagctgtct |
446 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||| |
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| T |
31068767 |
catcaatgaatttggtgtcgtcattaacaaatgtagatccattcttaacaccagaaagaaaaaacatataaagcttgaaagaacctttttatagccgtct |
31068668 |
T |
|
| Q |
447 |
ttttcaaggtgttcaccatagtgacatt |
474 |
Q |
| |
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|||||||||||||| ||||||||||||| |
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| T |
31068667 |
ttttcaaggtgttcgccatagtgacatt |
31068640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 559 - 642
Target Start/End: Complemental strand, 31068599 - 31068516
Alignment:
| Q |
559 |
tgtattcaagttaagcaacatcattttattacaatatttttcctataaagacgtagattagaacgttattagttcgtgatttag |
642 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||| ||||||||| |
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| T |
31068599 |
tgtattcaagttaagcaacatcatttttttacaacatttttcctataaagacgtagattagaacatcattagtttgtgatttag |
31068516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 31069264 - 31069154
Alignment:
| Q |
21 |
catgacatatatagtgtgacaa-gaatgcctatcatgaaaattaataatgaagatgcactggtgtagaaattcagcaaggatggaaaatataaagtttgg |
119 |
Q |
| |
|
|||||||||||||| |||| || ||| ||||| ||| | |||||||||||||||||||||||||||||||| |||||||||| || ||||| |||| || |
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| T |
31069264 |
catgacatatatagagtgaaaaagaacacctattatgcatattaataatgaagatgcactggtgtagaaattgagcaaggatgaaatatatacagttcgg |
31069165 |
T |
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| Q |
120 |
ttggcctatag |
130 |
Q |
| |
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| T |
31069164 |
tcggcctatag |
31069154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 565 - 677
Target Start/End: Original strand, 1998151 - 1998264
Alignment:
| Q |
565 |
caagttaagcaacatcattttattacaatatttttcctataaagacgtagattagaacgttattagttcgtgatttagagtc-tgaaacattggactctt |
663 |
Q |
| |
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||||||||| | |||||||||||||||| |||| ||||||||| |||| || || |||| ||||||||||||||||||| | ||||||||||||||| |
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| T |
1998151 |
caagttaagtagcatcattttattacaaagttttctctataaagatatagaatataaggttactagttcgtgatttagagtcttaaaacattggactctt |
1998250 |
T |
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| Q |
664 |
ctacttatacttca |
677 |
Q |
| |
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||||||| |||||| |
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| T |
1998251 |
ctacttaaacttca |
1998264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 31068859 - 31068785
Alignment:
| Q |
270 |
tagaatggttgactgacatatcagaggaactagtgttactgttaatagaaatggaatgtcaacttgtagttcatagtg |
347 |
Q |
| |
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||||||||| ||||| |||||||||||| | ||||||| | | ||||||||||||||||||| |||||||||||||| |
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| T |
31068859 |
tagaatggtcgactggcatatcagaggacc-agtgttagtat--atagaaatggaatgtcaacatgtagttcatagtg |
31068785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 724 - 769
Target Start/End: Original strand, 1998331 - 1998376
Alignment:
| Q |
724 |
ttgatagatcacaaagcacatttcattgtccgacattagcgataag |
769 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
1998331 |
ttgatagatcacaaaaaacatttcattgtccgacattagccataag |
1998376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 31055380 - 31055321
Alignment:
| Q |
71 |
agatgcactggtgtagaaattcagcaaggatggaaaatataaagtttggttggcctatag |
130 |
Q |
| |
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||||| |||||||||||||| |||||||||| ||||||||| || | ||| ||||||||| |
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| T |
31055380 |
agatggactggtgtagaaatccagcaaggatagaaaatatacagctcggtcggcctatag |
31055321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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