View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11428_low_14 (Length: 363)

Name: NF11428_low_14
Description: NF11428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11428_low_14
NF11428_low_14
[»] chr7 (2 HSPs)
chr7 (187-321)||(41772055-41772192)
chr7 (1-63)||(2430772-2430834)
[»] chr5 (3 HSPs)
chr5 (1-63)||(35467532-35467594)
chr5 (1-63)||(7529909-7529971)
chr5 (1-42)||(9269683-9269724)
[»] chr4 (5 HSPs)
chr4 (1-63)||(49889393-49889455)
chr4 (1-55)||(30657787-30657841)
chr4 (1-63)||(49233123-49233185)
chr4 (1-63)||(6447218-6447280)
chr4 (1-63)||(53921793-53921856)
[»] chr2 (1 HSPs)
chr2 (1-63)||(5077314-5077376)
[»] chr1 (3 HSPs)
chr1 (1-63)||(4796097-4796159)
chr1 (1-63)||(8170565-8170627)
chr1 (1-63)||(25659152-25659214)
[»] chr8 (3 HSPs)
chr8 (4-63)||(24100852-24100911)
chr8 (1-59)||(26747796-26747854)
chr8 (1-63)||(27631730-27631791)
[»] chr3 (5 HSPs)
chr3 (3-56)||(5185745-5185798)
chr3 (1-63)||(38888238-38888300)
chr3 (1-44)||(5175480-5175523)
chr3 (3-49)||(5241224-5241270)
chr3 (1-63)||(46235332-46235394)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-63)||(67651-67713)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-63)||(27825-27887)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 187 - 321
Target Start/End: Complemental strand, 41772192 - 41772055
Alignment:
Q  187 cttagggaaagaattgaattgcaaaatgataaactctttctactcatggatatgt---ctcttatttgtacaaattatggaattggcctcacattcacct 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||      
T  41772192 cttagggaaagaattgaattgcaaaatgataaactctttctactcatggatatatgtcctcttatttgtacaaattatggaattggcctcacattcacta 41772093  T
Q  284 actagacccaatacacatcatataatccacaactaact 321  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41772092 actagacccaatacacatcatataatccacaactaact 41772055  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2430772 - 2430834
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggacccaccattta 63  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2430772 tcttcttccctctttcttctcacttttgaagagaaaacaaaaaggtatgggacccaccattta 2430834  T

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Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 35467594 - 35467532
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggacccaccattta 63  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35467594 tcttcttccctctttcttctcacttttgaagagaaaacaaaaaggtatgggacccaccattta 35467532  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 7529909 - 7529971
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggacccaccattta 63  Q
    |||||||||||| |||||||||||||||||  ||||  |||||||||||||| ||||||||||    
T  7529909 tcttcttccctccttcttctcacttttgaagggaaacaaaaaaggtatgggatccaccattta 7529971  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9269683 - 9269724
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaa 42  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  9269683 tcttcttccctctttcttctcacttttaaagagaaaacaaaa 9269724  T

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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 49889393 - 49889455
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggacccaccattta 63  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  49889393 tcttcttccctctttcttctcacttttgaagagaaaacaaaaaggtatgggacccaccattta 49889455  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30657841 - 30657787
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggaccc 55  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  30657841 tcttcttccctctttcttctcacttttgaagagaaaacaaaagggtatgggaccc 30657787  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 49233185 - 49233123
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggacccaccattta 63  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||||| | |||||||||||    
T  49233185 tcttcttccctctttcttctcacttttgaagagaaacaaaaaaggtatgaggcccaccattta 49233123  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 6447218 - 6447280
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggacccaccattta 63  Q
    ||||| ||||||||||||||||| |||||| |||||  ||||||||||||| |||||||||||    
T  6447218 tcttcatccctctttcttctcacatttgaagagaaacaaaaaaggtatggggcccaccattta 6447280  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 53921856 - 53921793
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaa-acaaaaaggtatgggacccaccattta 63  Q
    |||||||||||||||||||||||||||||| ||||| | ||||| ||||||| ||||| |||||    
T  53921856 tcttcttccctctttcttctcacttttgaagagaaacaaaaaaaagtatggggcccacaattta 53921793  T

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Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 5077314 - 5077376
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggacccaccattta 63  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5077314 tcttcttccctctttcttctcacttttgaagagaaaacaaaaaggtatgggacccaccattta 5077376  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4796097 - 4796159
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggacccaccattta 63  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  4796097 tcttcttccctctttcttctcacttttgaagagaaaactaaaaggtatgggacccaccattta 4796159  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8170565 - 8170627
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggacccaccattta 63  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8170565 tcttctttcctctttcttctcacttttgaagagaaaacaaaaaggtatgggacccaccattta 8170627  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 25659152 - 25659214
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggacccaccattta 63  Q
    |||||||||||||||||||||||||||||| |||||  |||| ||||||||||||||||||||    
T  25659152 tcttcttccctctttcttctcacttttgaagagaaacaaaaacggtatgggacccaccattta 25659214  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 24100852 - 24100911
Alignment:
Q  4 tcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggacccaccattta 63  Q
    |||||||||||||||||||| |||||| ||||||||||||| |||| |||||||||||||    
T  24100852 tcttccctctttcttctcacctttgaagagaaaacaaaaagatatgagacccaccattta 24100911  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 26747854 - 26747796
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggacccacca 59  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||||||  |||||||    
T  26747854 tcttcttccctctttcttctcacttttgaagagaaacaaaaaaggtatggagcccacca 26747796  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 27631730 - 27631791
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggacccaccattta 63  Q
    ||||||||||||||||||| ||||||| || |||||  ||||||||||||| |||||||||||    
T  27631730 tcttcttccctctttcttcacacttttaaagagaaacaaaaaaggtatggg-cccaccattta 27631791  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 5185798 - 5185745
Alignment:
Q  3 ttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggaccca 56  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||||||||    
T  5185798 ttctttcctctttcttctcccttttgaagagaaaacaaaaaggtatgggaccca 5185745  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 38888300 - 38888238
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggacccaccattta 63  Q
    |||||||||||||||||||||||||||||| | |||  ||||||||||||  |||||||||||    
T  38888300 tcttcttccctctttcttctcacttttgaagaaaaacaaaaaaggtatggagcccaccattta 38888238  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 5175523 - 5175480
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaag 44  Q
    ||||||||||||||| |||||||||||||| |||||||||||||    
T  5175523 tcttcttccctctttgttctcacttttgaagagaaaacaaaaag 5175480  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 5241270 - 5241224
Alignment:
Q  3 ttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatg 49  Q
    ||||||||||||||||||| |||||||| |||||||| |||||||||    
T  5241270 ttcttccctctttcttctcccttttgaagagaaaacataaaggtatg 5241224  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 46235394 - 46235332
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggacccaccattta 63  Q
    |||||||||||||||||||||| ||||||| |||||  |||| |||||||| |||| ||||||    
T  46235394 tcttcttccctctttcttctcatttttgaagagaaacaaaaagggtatggggcccatcattta 46235332  T

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Target: scaffold0060 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 67713 - 67651
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggacccaccattta 63  Q
    |||||||||||||||||||||||||||||| || ||  ||||||||||||  |||||||||||    
T  67713 tcttcttccctctttcttctcacttttgaagagtaacaaaaaaggtatggagcccaccattta 67651  T

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Target: scaffold0096 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27887 - 27825
Alignment:
Q  1 tcttcttccctctttcttctcacttttgaacagaaaacaaaaaggtatgggacccaccattta 63  Q
    ||||||| || ||||||||||||||||||| |||||  |||||||||||||  ||||||||||    
T  27887 tcttctttcccctttcttctcacttttgaagagaaacaaaaaaggtatggggtccaccattta 27825  T

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