View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11428_low_15 (Length: 353)
Name: NF11428_low_15
Description: NF11428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11428_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 4903181 - 4903510
Alignment:
| Q |
19 |
agagcattctcaagttcgacctcaacctcacccatagctggtctttcatttggatctatattcaagcatcttttcatgatatccatgaacacttccaaac |
118 |
Q |
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| T |
4903181 |
agagcatgctcaagttcgacctcaacctcacccatagctggtctttcatttggttctatattcaagcatcttttcatgatatccatgaacactgccaaac |
4903280 |
T |
|
| Q |
119 |
attgcggcgcaatcaatctcatgagaatgggatcaataatcttatcagcagggaacctctccagaaagttagctggattcgatgacttttctaaaaaccg |
218 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4903281 |
attgcggcgctattaatctcatgagaatgggatcaataatcttatcagcagggaacctctccaaaaagttagctggattcgatgacttttctaaaaaccg |
4903380 |
T |
|
| Q |
219 |
atctttgttctctaacatgaccatcttatcaaagatagtattcttataatttgtgcctgctacttcaattagaaccataccaaaagaataaacatcacat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4903381 |
atctttgttctctaacatgaccatcttatcaaagatagtattcttataatttgtgcctgctacttcaattagaaccataccaaaagaataaacatcacat |
4903480 |
T |
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| Q |
319 |
ttatctgtgaatgtattggttcggacacac |
348 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
4903481 |
ttatctgtgaatgtattggttcggacacac |
4903510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 4906557 - 4906884
Alignment:
| Q |
18 |
cagagcattctcaagttcgacctcaacctcacccatagctggtctttcatttggatctatattcaagcatcttttcatgatatccatgaacacttccaaa |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4906557 |
cagagcatgctcaagttcgacctcaacctcacccatagctggtctttcatttggttctatattcaagcatcttttcatgatatccatgaacacttccaaa |
4906656 |
T |
|
| Q |
118 |
cattgcggcgcaatcaatctcatgagaatgggatcaataatcttatcagcagggaacctctccagaaagttagctggattcgatgacttttctaaaaacc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||| ||||||||||| |||||| |
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| T |
4906657 |
cattgcggcgcaatcaatctcatgagaatgggatcaataatctcattagctgggaacctctccaaaaagttagctggattaaatgacttttctgaaaacc |
4906756 |
T |
|
| Q |
218 |
gatctttgttctctaacatgaccatcttatcaaagatagtattcttataatttgtgcctgctacttcaattagaaccataccaaaagaataaacatcaca |
317 |
Q |
| |
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|| | ||| |||||||||| ||||||||| ||||| |||||||| |||||||||| |||||||| || ||||||||||||||| || ||||| ||| | |
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| T |
4906757 |
aatatgtgtcatctaacatgatcatcttatcgaagatggtattcttgtaatttgtgcatgctacttgaagtagaaccataccaaaggagtaaacgtcaga |
4906856 |
T |
|
| Q |
318 |
tttatctgtgaatgtattggttcggaca |
345 |
Q |
| |
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|||||||||||| || |||||| ||||| |
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|
| T |
4906857 |
tttatctgtgaaagtgttggttaggaca |
4906884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 5823082 - 5822756
Alignment:
| Q |
19 |
agagcattctcaagttcgacctcaacctcacccatagctggtctttcatttggatctatattcaagcatcttttcatgatatccatgaacacttccaaac |
118 |
Q |
| |
|
||||||| ||| ||||| ||||||||||| ||||| ||||||||||| ||||| ||||||||||||||| ||||||||| |||||||||||| | ||||| |
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| T |
5823082 |
agagcatgctcgagttcaacctcaacctcgcccattgctggtctttcgtttgggtctatattcaagcattttttcatgacatccatgaacaccttcaaac |
5822983 |
T |
|
| Q |
119 |
attgcggcgcaatcaatctcatgagaatgggatcaataatcttatcagcagggaacctctccagaaagttagctggattcgat-gacttttctaaaaacc |
217 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||| || ||| | |||||||||| ||| |||||| ||| | | | ||||||||| |
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| T |
5822982 |
accacggcgcaatcaatctcatgagaatgggatcaataatctcataagctgcaaacctctccaaaaatttagct-acttcattcggccgttctaaaaata |
5822884 |
T |
|
| Q |
218 |
gatctttgttctctaacatgaccatcttatcaaagatagtattcttataatttgtgcctgctacttcaattagaaccataccaaaagaataaacatcaca |
317 |
Q |
| |
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|| | || ||||| | | ||||||||||||||| |||| || || ||||| | | || |||||| ||||||||||||||| || ||||||||||| |
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| T |
5822883 |
tatttggattatctaatacgttcatcttatcaaagatggtatatttgtagtttgtacatactgcttcaagtagaaccataccaaaggagtaaacatcaca |
5822784 |
T |
|
| Q |
318 |
tttatctgtgaatgtattggttcggaca |
345 |
Q |
| |
|
|||||||||||| ||||||||||||||| |
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| T |
5822783 |
tttatctgtgaaagtattggttcggaca |
5822756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 4924061 - 4923900
Alignment:
| Q |
21 |
agcattctcaagttcgacctcaacctcacccatagctggtctttcatttggatcta---tattcaagcatcttttcatgatatccatgaacacttccaaa |
117 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||||| ||| |||||| ||||| |
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| T |
4924061 |
agcatgctcaagttcaacctcaacctcacccattgttggtctttcatttggttctccactattcaagcatcttttcatgatattcataaacactgccaaa |
4923962 |
T |
|
| Q |
118 |
cattgcggcgcaatcaatctcatgagaatgggatcaataatcttatcagcagggaacctctc |
179 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||| |
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|
| T |
4923961 |
cattgcggcgctatcaatctcatgagaatgggatcaataatttcgtcagctgggaacctctc |
4923900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 4929398 - 4929227
Alignment:
| Q |
19 |
agagcattctcaagttcgacctcaacctcacccatagctggtctttcatttggatcta---tattcaagcatcttttcatgatatccatgaacacttcca |
115 |
Q |
| |
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||||||| ||||||||| ||||||||||||||||| | |||||||||||||| ||| |||||||||||||||||||||||| | ||||||| ||| |
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| T |
4929398 |
agagcatgctcaagttcaacctcaacctcacccattgaaggtctttcatttggttcttctctattcaagcatcttttcatgatattgacgaacactgcca |
4929299 |
T |
|
| Q |
116 |
aacattgcggcgcaatcaatctcatgagaatgggatcaataatcttatcagcagggaacctctccagaaagt |
187 |
Q |
| |
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|||||| ||| | |||||||||| ||||||| ||||||||||| | |||||| ||||||||||| ||||||| |
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| T |
4929298 |
aacattccggtgaaatcaatctcgtgagaattggatcaataatttcatcagctgggaacctctctagaaagt |
4929227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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