View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11428_low_19 (Length: 275)
Name: NF11428_low_19
Description: NF11428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11428_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 52113478 - 52113204
Alignment:
| Q |
1 |
cgtcattagtttcacccgaaccacccaaaaaactttcaatgcgaagaatccctggagattacggcctcccattcgtaggtcctatcaaagaccgtcttga |
100 |
Q |
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| T |
52113478 |
cgtcattagtttcacccgaaccacccaaaaaacttccaatgcgaagaatccctggagattacggcctcccattcgtaggtcctatcaaagaccgtcttga |
52113379 |
T |
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| Q |
101 |
atatttctacaacgaaggcggccgcgacaaatatttcagaagtaaaatgcacaaatacaaatcaaccatttttcgcgctaatatgccaccaggcccattc |
200 |
Q |
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| T |
52113378 |
atatttctacaacgaaggcggccgcgacaaatatttcagaagcaaaatgcacaaatacaaatcaaccatttttcgcgctaatatgccaccaggcccattc |
52113279 |
T |
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| Q |
201 |
atttcctcaaacccaaacgtcattgttttacttgacggaaaatcattccctgttctcctcgacaattccaaagtt |
275 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52113278 |
atttcctctaacccaaacgtcattgttttacttgacggaaaatcattccctgttctcttcgacaattccaaagtt |
52113204 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 12505202 - 12505235
Alignment:
| Q |
183 |
atgccaccaggcccattcatttcctcaaacccaa |
216 |
Q |
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| T |
12505202 |
atgccaccaggtccattcatttcctcaaacccaa |
12505235 |
T |
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