View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11428_low_3 (Length: 514)

Name: NF11428_low_3
Description: NF11428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11428_low_3
NF11428_low_3
[»] chr7 (3 HSPs)
chr7 (118-246)||(41772186-41772313)
chr7 (417-503)||(2430706-2430792)
chr7 (27-69)||(41772326-41772367)
[»] chr3 (6 HSPs)
chr3 (417-503)||(38888280-38888366)
chr3 (417-503)||(46235374-46235460)
chr3 (417-502)||(43747869-43747954)
chr3 (420-503)||(5175503-5175586)
chr3 (420-503)||(5185780-5185862)
chr3 (423-503)||(5241252-5241334)
[»] chr8 (3 HSPs)
chr8 (417-503)||(26747834-26747920)
chr8 (417-501)||(27631664-27631748)
chr8 (443-503)||(24100809-24100869)
[»] chr1 (3 HSPs)
chr1 (417-503)||(4796031-4796117)
chr1 (417-503)||(8170499-8170585)
chr1 (420-503)||(25659089-25659172)
[»] chr2 (1 HSPs)
chr2 (417-503)||(5077248-5077334)
[»] chr4 (5 HSPs)
chr4 (420-503)||(49889330-49889413)
chr4 (417-503)||(49233165-49233251)
chr4 (417-503)||(53921836-53921920)
chr4 (417-489)||(45781779-45781851)
chr4 (423-466)||(30658062-30658105)
[»] chr5 (4 HSPs)
chr5 (417-503)||(7529843-7529929)
chr5 (419-503)||(9269620-9269703)
chr5 (417-469)||(35467931-35467983)
chr5 (468-503)||(35467574-35467609)
[»] scaffold0060 (1 HSPs)
scaffold0060 (420-503)||(67693-67777)
[»] scaffold0096 (1 HSPs)
scaffold0096 (417-503)||(27867-27954)
[»] scaffold1844 (1 HSPs)
scaffold1844 (425-490)||(37-102)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 118 - 246
Target Start/End: Complemental strand, 41772313 - 41772186
Alignment:
Q  118 caacgcacaagaacaaagaaaacaacacttaaatcttgaagtttaggaccccatagcttgagacactctataccacctattggaacatgatcaaagaata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  41772313 caacgcacaagaacaaagaaaacaacacttaaatcttgaagtttagg-ccccatagcttgagacactctataccacctattagaacttgatcaaagaata 41772215  T
Q  218 aacacacactctgagcgaaacatttaggg 246  Q
    ||||||||||| |||||||||| ||||||    
T  41772214 aacacacactcagagcgaaacacttaggg 41772186  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 417 - 503
Target Start/End: Original strand, 2430706 - 2430792
Alignment:
Q  417 tccttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagacatttttgtcttcttccctctttcttctc 503  Q
    ||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2430706 tccttaataagacaacattataatttatgattaattaaaaaatcaatggcatattagacatttttgtcttcttccctctttcttctc 2430792  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 41772367 - 41772326
Alignment:
Q  27 ctccattgatccccaattcttactatctagcatgagtagtttc 69  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  41772367 ctccattgatccc-aattcttactatctagcatgagtagtttc 41772326  T

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Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 417 - 503
Target Start/End: Complemental strand, 38888366 - 38888280
Alignment:
Q  417 tccttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagacatttttgtcttcttccctctttcttctc 503  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  38888366 tccttgataagacaacattataatttatgattaattaaaaaaccaatggcataatagacttttttgtcttcttccctctttcttctc 38888280  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 417 - 503
Target Start/End: Complemental strand, 46235460 - 46235374
Alignment:
Q  417 tccttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagacatttttgtcttcttccctctttcttctc 503  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  46235460 tccttgataagacatcattataatttatgattaattaaaaaaccaatggcataatagacttttttgtcttcttccctctttcttctc 46235374  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 417 - 502
Target Start/End: Original strand, 43747869 - 43747954
Alignment:
Q  417 tccttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagacatttttgtcttcttccctctttcttct 502  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| ||| |||||||    
T  43747869 tccttgataagacaacattataatttatgaataattaaaaaaccaatggcataatagacttttttgtcttcttctctcattcttct 43747954  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 420 - 503
Target Start/End: Complemental strand, 5175586 - 5175503
Alignment:
Q  420 ttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagacatttttgtcttcttccctctttcttctc 503  Q
    |||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||| |||||    
T  5175586 ttgataagacaacattataatttatgattaattgaaaaaccaatgacatattagacttttttatcttcttccctctttgttctc 5175503  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 420 - 503
Target Start/End: Complemental strand, 5185862 - 5185780
Alignment:
Q  420 ttgataagacaaaattataatttatgattaatt-aaaaaaccaatggcatattagacatttttgtcttcttccctctttcttctc 503  Q
    |||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||||  |||||| ||||| |||||||||||||    
T  5185862 ttgataagccaatattataatttatgattaattgaaaaaaccaatggtatattagac--ttttgtgttctttcctctttcttctc 5185780  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 423 - 503
Target Start/End: Complemental strand, 5241334 - 5241252
Alignment:
Q  423 ataagacaaaattataatttatgattaatta-aaaaaccaatggcatattagacat-ttttgtcttcttccctctttcttctc 503  Q
    ||||||||| ||||||||| ||||||||||  ||||| |||||| ||||||||||| |||| | |||||||||||||||||||    
T  5241334 ataagacaatattataattgatgattaattgcaaaaatcaatggtatattagacattttttttattcttccctctttcttctc 5241252  T

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Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 417 - 503
Target Start/End: Complemental strand, 26747920 - 26747834
Alignment:
Q  417 tccttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagacatttttgtcttcttccctctttcttctc 503  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  26747920 tccttgataagacaacattctaatttatgattaattaaaaaaccaatggcataatagacttttttgtcttcttccctctttcttctc 26747834  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 417 - 501
Target Start/End: Original strand, 27631664 - 27631748
Alignment:
Q  417 tccttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagacatttttgtcttcttccctctttcttc 501  Q
    ||||| |||||| || |||| | |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  27631664 tccttaataagataacattacactttatgattaattaaaaaaccaatggcataatagacttttttgtcttcttccctctttcttc 27631748  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 443 - 503
Target Start/End: Original strand, 24100809 - 24100869
Alignment:
Q  443 atgattaattaaaaaaccaatggcatattagacatttttgtcttcttccctctttcttctc 503  Q
    |||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  24100809 atgattaattaaaaaatcaatggcatattagacatttttatcctcttccctctttcttctc 24100869  T

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Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 417 - 503
Target Start/End: Original strand, 4796031 - 4796117
Alignment:
Q  417 tccttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagacatttttgtcttcttccctctttcttctc 503  Q
    |||||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4796031 tccttgataaaacaacattataatttatgattaattgaaaaatcaatggcatattagacatttttgtcttcttccctctttcttctc 4796117  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 417 - 503
Target Start/End: Original strand, 8170499 - 8170585
Alignment:
Q  417 tccttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagacatttttgtcttcttccctctttcttctc 503  Q
    ||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  8170499 tccttgataagacaacattataatttatgattaattgaaaaatcaatggcatattagacatttttgtcttctttcctctttcttctc 8170585  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 420 - 503
Target Start/End: Original strand, 25659089 - 25659172
Alignment:
Q  420 ttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagacatttttgtcttcttccctctttcttctc 503  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||    
T  25659089 ttgataagacaacattataatttatgattaattaaaaaaccaatgacataatagacttttttgtcttcttccctctttcttctc 25659172  T

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Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 417 - 503
Target Start/End: Original strand, 5077248 - 5077334
Alignment:
Q  417 tccttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagacatttttgtcttcttccctctttcttctc 503  Q
    ||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||    
T  5077248 tccttgataagacaacatcataatttatgattaattaaaaaatcaatgacatattagacttttttgtcttcttccctctttcttctc 5077334  T

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Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 420 - 503
Target Start/End: Original strand, 49889330 - 49889413
Alignment:
Q  420 ttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagacatttttgtcttcttccctctttcttctc 503  Q
    |||||||||||| ||||||||||||||||||||||||||  |||| ||||||||| ||||||||||||||||||||||||||||    
T  49889330 ttgataagacaacattataatttatgattaattaaaaaattaatgacatattagatatttttgtcttcttccctctttcttctc 49889413  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 417 - 503
Target Start/End: Complemental strand, 49233251 - 49233165
Alignment:
Q  417 tccttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagacatttttgtcttcttccctctttcttctc 503  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| |||||| || || |||||||||||||||||||||||||||    
T  49233251 tccttgataagacaacattataatttatgatcaattaaaaaaccaacggcataataaacttttttgtcttcttccctctttcttctc 49233165  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 417 - 503
Target Start/End: Complemental strand, 53921920 - 53921836
Alignment:
Q  417 tccttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagac-atttttgtcttcttccctctttcttctc 503  Q
    ||||||||||||||| |||||||||||||||   |||||||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  53921920 tccttgataagacaacattataatttatgat---ttaaaaaaccaatgacatattagactttttttgtcttcttccctctttcttctc 53921836  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 45781851 - 45781779
Alignment:
Q  417 tccttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagacatttttgtcttctt 489  Q
    |||||||||||| || |||| ||||||||||||||||||||||||||| |||| || || |||||||||||||    
T  45781851 tccttgataagataacattacaatttatgattaattaaaaaaccaatgacataataaacttttttgtcttctt 45781779  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 423 - 466
Target Start/End: Complemental strand, 30658105 - 30658062
Alignment:
Q  423 ataagacaaaattataatttatgattaattaaaaaaccaatggc 466  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  30658105 ataagacaacattataatttatgattaattaaaaaaccaatggc 30658062  T

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Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 417 - 503
Target Start/End: Original strand, 7529843 - 7529929
Alignment:
Q  417 tccttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagacatttttgtcttcttccctctttcttctc 503  Q
    ||||||||||||||| |||||  ||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||    
T  7529843 tccttgataagacaacattattttttatgattaattaaaaaatcaatggcatattagacttttttgtcttcttccctccttcttctc 7529929  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 419 - 503
Target Start/End: Original strand, 9269620 - 9269703
Alignment:
Q  419 cttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagacatttttgtcttcttccctctttcttctc 503  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||  ||||| | || |||||||||||||||||||||||||||    
T  9269620 cttgataagacaacattataatttatgattaatt-aaaaaccaataacatatcatacttttttgtcttcttccctctttcttctc 9269703  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 469
Target Start/End: Complemental strand, 35467983 - 35467931
Alignment:
Q  417 tccttgataagacaaaattataatttatgattaattaaaaaaccaatggcata 469  Q
    |||||||||| |||| |||||||||||||||||||||||||| ||||||||||    
T  35467983 tccttgataaaacaacattataatttatgattaattaaaaaatcaatggcata 35467931  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 503
Target Start/End: Complemental strand, 35467609 - 35467574
Alignment:
Q  468 tattagacatttttgtcttcttccctctttcttctc 503  Q
    |||| |||||||||||||||||||||||||||||||    
T  35467609 tatttgacatttttgtcttcttccctctttcttctc 35467574  T

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Target: scaffold0060 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 420 - 503
Target Start/End: Complemental strand, 67777 - 67693
Alignment:
Q  420 ttgataagacaaaattataatttatgattaattaaaaaa-ccaatggcatattagacatttttgtcttcttccctctttcttctc 503  Q
    |||||||||||| | |||||||||||||||||||||||| |||| |||||| ||||| |||||||||||||||||||||||||||    
T  67777 ttgataagacaacaatataatttatgattaattaaaaaaaccaacggcataatagacttttttgtcttcttccctctttcttctc 67693  T

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Target: scaffold0096 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 417 - 503
Target Start/End: Complemental strand, 27954 - 27867
Alignment:
Q  417 tccttgataagacaaaattataatttatgattaattaaaaaaccaatggcatattagac-atttttgtcttcttccctctttcttctc 503  Q
    ||||||||||||||| |||||||||||| |||||||||| ||||||||||||| |||||  ||||||||||||| || ||||||||||    
T  27954 tccttgataagacaacattataatttataattaattaaataaccaatggcataatagactttttttgtcttctttcccctttcttctc 27867  T

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Target: scaffold1844 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1844
Description:

Target: scaffold1844; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 490
Target Start/End: Complemental strand, 102 - 37
Alignment:
Q  425 aagacaaaattataatttatgattaattaaaaaaccaatggcatattagacatttttgtcttcttc 490  Q
    ||||||| ||||||||||||||||   |||||||| ||||| |||| |||| ||| ||||||||||    
T  102 aagacaacattataatttatgattcgataaaaaactaatggtatatcagacttttatgtcttcttc 37  T

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