View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11428_low_6 (Length: 410)
Name: NF11428_low_6
Description: NF11428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11428_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 2 - 394
Target Start/End: Original strand, 8172200 - 8172592
Alignment:
| Q |
2 |
tcgagagagaagaatcttaagtgcttttgtggctataccttggccccaataattgaacccaatagcaaaacccaaatctgctttaaactttgcataagaa |
101 |
Q |
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| T |
8172200 |
tcgagacaaaagaatcttaagtgcttttgtggctataccttggccccaataattgaatccaatagcaaaacctaaatctgctttaaactttgcataagaa |
8172299 |
T |
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| Q |
102 |
attggaagtacaaaaacaattccaatggagtgatcatcaagacatattgattgttggaatgggtaaatacaatcnnnnnnnatgaaattcaaagcttgtt |
201 |
Q |
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| T |
8172300 |
attggaagaacaaaaacaattccaatagagtgatcatcaagacatattgattgttggaatgggtaaatacaatctttctttatgaaattcaaagcttgtt |
8172399 |
T |
|
| Q |
202 |
cccttgaattacataacttcaatcgtgtatattgcatgactctttcatcacttgcccacaataacacatcgtcagcatcactttctttgaatggccggag |
301 |
Q |
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| T |
8172400 |
cccttgatttacataacttcaatcgtgtatattgcatgactctttcatcacttgcccacaataacacatcgtcagcatcactttctttgaatggccggag |
8172499 |
T |
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| Q |
302 |
agtgatccttgactcatgatctattgccatgaccacaatatgttaatatggccaagatattttggtatttatacaccaaaagtgtgtagttag |
394 |
Q |
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| T |
8172500 |
agtgatccttgactcatgatctattgccatgaccacaatatgttaatatggctaagatattttggtatttatacaccaaaagtgtgtggttag |
8172592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 385
Target Start/End: Original strand, 8169578 - 8169953
Alignment:
| Q |
11 |
aagaatcttaagtgcttttgtggctataccttggccccaataattgaacccaatagcaaaacccaaatctgctttaaactttgcataagaaattggaagt |
110 |
Q |
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| T |
8169578 |
aagaatcttcactgctttggtggctacaccttggccccaatagttaaacccaatagcataacctaaatctgctttaaactttgcatcaggataaggaagg |
8169677 |
T |
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| Q |
111 |
acaaaaacaattccaatggagtgatcatcaagacatattgattgttggaatgggtaaatacaatcnnnnnnnatgaaattcaaagcttgttcccttgaat |
210 |
Q |
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| T |
8169678 |
acaaaaacaattccaatagagtgatcattaagacatattgattgttggaatgggtaaatgcaatcattttttatgaaattcgaagcttgttcccttgatt |
8169777 |
T |
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| Q |
211 |
tacataacttcaatcgtgtatattgcatgactctttcatcacttgcccacaataacacatcgtcagcatcactttctttgaatggccggagagtgatcct |
310 |
Q |
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| T |
8169778 |
tacataactccaatcgcatatattgcatgactctttcatcacttgcccacaataacacatcgtcagcatcactttctttgaatggccggagagtaatcct |
8169877 |
T |
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| Q |
311 |
tgactcatgatctattgccatgaccacaatatgttaat-atggccaagatattttggtatttatacaccaaaagtg |
385 |
Q |
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| T |
8169878 |
tgactcatgatctattgccatgaccaaaatatgttgatgatggctaagatattttggtatttatataccaaaagtg |
8169953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 8177269 - 8177323
Alignment:
| Q |
115 |
aaacaattccaatggagtgatcatcaagacatattgattgttggaatgggtaaat |
169 |
Q |
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|||| |||||||||||||| |||||||||||||||||||| ||| ||||||||| |
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| T |
8177269 |
aaaccattccaatggagtggtcatcaagacatattgattggcggattgggtaaat |
8177323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 8177160 - 8177237
Alignment:
| Q |
9 |
agaagaatcttaagtgcttttgtggctataccttggccccaataattgaacccaatagcaaaacccaaatctgcttta |
86 |
Q |
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||||||||||| | ||| || ||||| || ||||| |||||||| ||||| ||||||||| |||||| |||||||||| |
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| T |
8177160 |
agaagaatcttcactgcattagtggcaatcccttgaccccaatagttgaatccaatagcataacccatatctgcttta |
8177237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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