View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11428_low_9 (Length: 393)

Name: NF11428_low_9
Description: NF11428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11428_low_9
NF11428_low_9
[»] chr8 (5 HSPs)
chr8 (3-109)||(9200332-9200438)
chr8 (2-111)||(44061279-44061388)
chr8 (131-201)||(44061431-44061502)
chr8 (131-187)||(9200469-9200527)
chr8 (1-51)||(24100706-24100756)
[»] chr3 (7 HSPs)
chr3 (3-111)||(14092837-14092945)
chr3 (8-111)||(33647146-33647249)
chr3 (257-291)||(33646948-33646982)
chr3 (1-37)||(24088032-24088068)
chr3 (1-53)||(24346160-24346212)
chr3 (1-53)||(28255166-28255218)
chr3 (1-53)||(43884990-43885042)
[»] chr2 (6 HSPs)
chr2 (1-107)||(4681571-4681677)
chr2 (15-107)||(1777198-1777290)
chr2 (11-111)||(13979020-13979120)
chr2 (257-291)||(1777006-1777040)
chr2 (11-53)||(9272963-9273005)
chr2 (8-53)||(9225095-9225140)
[»] chr6 (3 HSPs)
chr6 (1-98)||(3711519-3711616)
chr6 (7-53)||(32818821-32818867)
chr6 (131-201)||(3711655-3711727)
[»] chr5 (5 HSPs)
chr5 (1-98)||(27878688-27878785)
chr5 (131-201)||(27878823-27878895)
chr5 (6-53)||(30670478-30670525)
chr5 (3-54)||(18515726-18515777)
chr5 (1-53)||(12464224-12464276)
[»] chr7 (4 HSPs)
chr7 (1-79)||(40786287-40786365)
chr7 (1-53)||(34996740-34996792)
chr7 (6-53)||(42271079-42271126)
chr7 (1-53)||(22643950-22644002)
[»] chr4 (4 HSPs)
chr4 (6-53)||(10310655-10310702)
chr4 (8-53)||(33633165-33633210)
chr4 (6-53)||(53841517-53841564)
chr4 (11-53)||(50796358-50796400)
[»] chr1 (3 HSPs)
chr1 (6-51)||(30725839-30725884)
chr1 (6-53)||(52906861-52906908)
chr1 (5-53)||(30613113-30613161)


Alignment Details
Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 9200332 - 9200438
Alignment:
Q  3 atgtattgtttggtataagagagatagaagagaaattgaaaagaaagaagttgaatgattttatgagttgacaaaaatgtccctatctaaaaaatctaat 102  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9200332 atgtattgtttggtataagagagatcgaagagaaattgaaaagagagaagttgaatgattttatgagttgacaaaaatgtccctatctaaaaaatctaat 9200431  T
Q  103 atttgta 109  Q
    |||||||    
T  9200432 atttgta 9200438  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 44061279 - 44061388
Alignment:
Q  2 gatgtattgtttggtataagagagatagaagagaaattgaaaagaaagaagttgaatgattttatgagttgacaaaaatgtccctatctaaaaaatctaa 101  Q
    |||||||||||||||||||||||||||  |||||||||||||||| ||||||||||| ||||||||| |||| ||||| | |||| |||||||||||| |    
T  44061279 gatgtattgtttggtataagagagatatgagagaaattgaaaagagagaagttgaataattttatgaattgataaaaaagcccctctctaaaaaatctta 44061378  T
Q  102 tatttgtagt 111  Q
    ||||||||||    
T  44061379 tatttgtagt 44061388  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 44061431 - 44061502
Alignment:
Q  131 tgtttgttaattgattttatttt-ttctattagttaaaataattacttaaattaccatttgattacgttacg 201  Q
    ||||||||||||||||||||||| |||||||  |||||||||||||| ||||||||||||||||| ||||||    
T  44061431 tgtttgttaattgattttatttttttctatttattaaaataattactaaaattaccatttgattatgttacg 44061502  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 9200469 - 9200527
Alignment:
Q  131 tgtttgttaattgattttattttttctatt--agttaaaataattacttaaattaccat 187  Q
    ||||||||||||||||||| ||||||||||  | ||| |||||||| ||||||||||||    
T  9200469 tgtttgttaattgattttaatttttctattaaaattacaataattatttaaattaccat 9200527  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24100706 - 24100756
Alignment:
Q  1 tgatgtattgtttggtataagagagatagaagagaaattgaaaagaaagaa 51  Q
    |||||||||||||||||||||||| | |  |||||||| ||||||||||||    
T  24100706 tgatgtattgtttggtataagagaaagaatagagaaatagaaaagaaagaa 24100756  T

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Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 14092945 - 14092837
Alignment:
Q  3 atgtattgtttggtataagagagatagaagagaaattgaaaagaaagaagttgaatgattttatgagttgacaaaaatgtccctatctaaaaaatctaat 102  Q
    |||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||| ||    
T  14092945 atgtattgtttggtataacagagataggagagaaattgaaaagagagaagttgaatgattttatgagttgacaaaaatgtccctctcaaaaaaatcttat 14092846  T
Q  103 atttgtagt 111  Q
    |||||||||    
T  14092845 atttgtagt 14092837  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 33647249 - 33647146
Alignment:
Q  8 ttgtttggtataagagagatagaagagaaattgaaaagaaagaagttgaatgattttatgagttgacaaaaatgtccctatctaaaaaatctaatatttg 107  Q
    |||||| |||||||| ||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33647249 ttgtttcgtataagatagataaaaaagaaatagaaaagaaagaagttgaatgattttatgagttgacaaaaatgtccctacctaaaaaatctaatatttg 33647150  T
Q  108 tagt 111  Q
    ||||    
T  33647149 tagt 33647146  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 33646982 - 33646948
Alignment:
Q  257 tacactattatttttcatcaaaaaatgttcatgtt 291  Q
    |||||||||||||||||||||||||||||| ||||    
T  33646982 tacactattatttttcatcaaaaaatgttcctgtt 33646948  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24088068 - 24088032
Alignment:
Q  1 tgatgtattgtttggtataagagagatagaagagaaa 37  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  24088068 tgatggattgtttggtataagagaaatagaagagaaa 24088032  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24346212 - 24346160
Alignment:
Q  1 tgatgtattgtttggtataagagagatagaagagaaattgaaaagaaagaagt 53  Q
    |||||| |||||||||||||||||||||  |||||||| ||| ||| ||||||    
T  24346212 tgatgtgttgtttggtataagagagatatgagagaaatagaagagagagaagt 24346160  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28255218 - 28255166
Alignment:
Q  1 tgatgtattgtttggtataagagagatagaagagaaattgaaaagaaagaagt 53  Q
    |||||| |||||||||||||||||||||  |||||||| ||| ||| ||||||    
T  28255218 tgatgtgttgtttggtataagagagatatgagagaaatagaagagagagaagt 28255166  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 43884990 - 43885042
Alignment:
Q  1 tgatgtattgtttggtataagagagatagaagagaaattgaaaagaaagaagt 53  Q
    |||||| |||||||||||||||||||||  |||||||| ||| ||| ||||||    
T  43884990 tgatgtgttgtttggtataagagagatatgagagaaatagaagagagagaagt 43885042  T

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Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 4681571 - 4681677
Alignment:
Q  1 tgatgtattgtttggtataagagagatagaagagaaattgaaaagaaagaagttgaatgattttatgagttgacaaaaatgtccctatctaaaaaatcta 100  Q
    |||||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4681571 tgatgtgttgtttggtataagagagatagaagagaaatagaaaataaagaaattgaatgattttatgagttgacaaaaatgtccctacctaaaaaatcta 4681670  T
Q  101 atatttg 107  Q
    | |||||    
T  4681671 acatttg 4681677  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 1777290 - 1777198
Alignment:
Q  15 gtataagagagatagaagagaaattgaaaagaaagaagttgaatgattttatgagttgacaaaaatgtccctatctaaaaaatctaatatttg 107  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  1777290 gtataagagagatagaagagaaatagaaaataaagaagttgaatgattttataagttgacaaaaatgtccctacctaaaaaatctaatatttg 1777198  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 13979120 - 13979020
Alignment:
Q  11 tttggtataagagagatagaagagaaattgaaaagaaagaagttgaatgattttatgagttgacaaaaatgtccctatctaaaaaatctaatatttgtag 110  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| ||||||||||  ||||||||||||||||||||||||    
T  13979120 tttggtataagagagatagaatagaaatagaaaagaaagaagttgaatgattttataagttgataaaaatgtcctcatctaaaaaatctaatatttgtag 13979021  T
Q  111 t 111  Q
    |    
T  13979020 t 13979020  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 1777040 - 1777006
Alignment:
Q  257 tacactattatttttcatcaaaaaatgttcatgtt 291  Q
    |||||||||||||||||||||||||||||| ||||    
T  1777040 tacactattatttttcatcaaaaaatgttcctgtt 1777006  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 9273005 - 9272963
Alignment:
Q  11 tttggtataagagagatagaagagaaattgaaaagaaagaagt 53  Q
    |||||||||||||||| ||||||||||| || |||||||||||    
T  9273005 tttggtataagagagaaagaagagaaatagagaagaaagaagt 9272963  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 9225140 - 9225095
Alignment:
Q  8 ttgtttggtataagagagatagaagagaaattgaaaagaaagaagt 53  Q
    ||||||||||||||||||| | ||||||||| || |||||||||||    
T  9225140 ttgtttggtataagagagaaataagagaaatagagaagaaagaagt 9225095  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 3711519 - 3711616
Alignment:
Q  1 tgatgtattgtttggtataagagagatagaagagaaattgaaaagaaagaagttgaatgattttatgagttgacaaaaatgtccctatctaaaaaatc 98  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3711519 tgatgtattgtttgatataagagagatataagagaaattgaaaagagagaagttggatgattttatgagttgacaaaaatgtccctatctaaaaaatc 3711616  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 32818821 - 32818867
Alignment:
Q  7 attgtttggtataagagagatagaagagaaattgaaaagaaagaagt 53  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||||    
T  32818821 attgtttggtataagagagatagaaaagaaattgagaagagagaagt 32818867  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 3711655 - 3711727
Alignment:
Q  131 tgtttgttaattgattttattttttctattag--ttaaaataattacttaaattaccatttgattacgttacg 201  Q
    ||||| |||||||||||||  ||||||||||   ||||||||||||||||||||||||| | |||| ||||||    
T  3711655 tgtttcttaattgattttaaattttctattaaaattaaaataattacttaaattaccatctaattatgttacg 3711727  T

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Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 27878688 - 27878785
Alignment:
Q  1 tgatgtattgtttggtataagagagatagaagagaaattgaaaagaaagaagttgaatgattttatgagttgacaaaaatgtccctatctaaaaaatc 98  Q
    |||||||||||||| |||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27878688 tgatgtattgtttgatataagagagatagaagagagattgaaaagagagaagttggatgattttatgagttgacaaaaatgtccctatctaaaaaatc 27878785  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 27878823 - 27878895
Alignment:
Q  131 tgtttgttaattgattttattttttctattag--ttaaaataattacttaaattaccatttgattacgttacg 201  Q
    |||||||||||||||||||  ||||||||||   ||||||||||||||||||||||||| | |||| ||||||    
T  27878823 tgtttgttaattgattttaaattttctattaaaattaaaataattacttaaattaccatctaattatgttacg 27878895  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 30670478 - 30670525
Alignment:
Q  6 tattgtttggtataagagagatagaagagaaattgaaaagaaagaagt 53  Q
    ||||||||||||||||||||| ||||||||||| ||| ||||||||||    
T  30670478 tattgtttggtataagagagaaagaagagaaatagaagagaaagaagt 30670525  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 18515726 - 18515777
Alignment:
Q  3 atgtattgtttggtataagagagatagaagagaaattgaaaagaaagaagtt 54  Q
    |||||||||||||||||| ||| | ||||||||||| ||||||| |||||||    
T  18515726 atgtattgtttggtataaaagaaagagaagagaaatagaaaagagagaagtt 18515777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12464276 - 12464224
Alignment:
Q  1 tgatgtattgtttggtataagagagatagaagagaaattgaaaagaaagaagt 53  Q
    |||||| ||||||||| ||| ||||| ||||||||||| ||||||| ||||||    
T  12464276 tgatgtgttgtttggtttaaaagagagagaagagaaatagaaaagagagaagt 12464224  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 40786365 - 40786287
Alignment:
Q  1 tgatgtattgtttggtataagagagatagaagagaaattgaaaagaaagaagttgaatgattttatgagttgacaaaaa 79  Q
    |||||||||||||||||||||||||| |  | | |||| ||| ||||||||||||||||| ||||||| ||||||||||    
T  40786365 tgatgtattgtttggtataagagagaaaagatacaaatagaagagaaagaagttgaatgaatttatgaattgacaaaaa 40786287  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34996792 - 34996740
Alignment:
Q  1 tgatgtattgtttggtataagagagatagaagagaaattgaaaagaaagaagt 53  Q
    |||||||||||||||||||||||||| ||||||||||| || |||| ||||||    
T  34996792 tgatgtattgtttggtataagagagaaagaagagaaatagagaagagagaagt 34996740  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 42271079 - 42271126
Alignment:
Q  6 tattgtttggtataagagagatagaagagaaattgaaaagaaagaagt 53  Q
    ||||||||||||||||||||| ||||||||||| ||| ||||||||||    
T  42271079 tattgtttggtataagagagaaagaagagaaatagaagagaaagaagt 42271126  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 22643950 - 22644002
Alignment:
Q  1 tgatgtattgtttggtataagagagatagaagagaaattgaaaagaaagaagt 53  Q
    ||||||||||||||||| |||||||||| || |||||| || |||||||||||    
T  22643950 tgatgtattgtttggtagaagagagatataaaagaaatagagaagaaagaagt 22644002  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 10310655 - 10310702
Alignment:
Q  6 tattgtttggtataagagagatagaagagaaattgaaaagaaagaagt 53  Q
    ||||||||||||||||||||| ||||||||||| ||| ||||||||||    
T  10310655 tattgtttggtataagagagaaagaagagaaatagaagagaaagaagt 10310702  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 33633165 - 33633210
Alignment:
Q  8 ttgtttggtataagagagatagaagagaaattgaaaagaaagaagt 53  Q
    ||||||||||||||||||| ||||||||||| || |||||||||||    
T  33633165 ttgtttggtataagagagaaagaagagaaatagagaagaaagaagt 33633210  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 53841564 - 53841517
Alignment:
Q  6 tattgtttggtataagagagatagaagagaaattgaaaagaaagaagt 53  Q
    ||||||||||||||||||||| |||| |||||| ||| ||||||||||    
T  53841564 tattgtttggtataagagagaaagaatagaaatagaagagaaagaagt 53841517  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 50796358 - 50796400
Alignment:
Q  11 tttggtataagagagatagaagagaaattgaaaagaaagaagt 53  Q
    |||||||||||||| | | ||||||||||||||||||||||||    
T  50796358 tttggtataagagaaagataagagaaattgaaaagaaagaagt 50796400  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 30725884 - 30725839
Alignment:
Q  6 tattgtttggtataagagagatagaagagaaattgaaaagaaagaa 51  Q
    ||||||||||||||||||||| ||||||||||| ||| ||||||||    
T  30725884 tattgtttggtataagagagaaagaagagaaatagaagagaaagaa 30725839  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 52906861 - 52906908
Alignment:
Q  6 tattgtttggtataagagagatagaagagaaattgaaaagaaagaagt 53  Q
    ||||||||||||||||||||| |||||||| || ||| ||||||||||    
T  52906861 tattgtttggtataagagagaaagaagagagatagaagagaaagaagt 52906908  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 30613113 - 30613161
Alignment:
Q  5 gtattgtttggtataagagagatagaagagaaattgaaaagaaagaagt 53  Q
    |||||||||| | ||||||||||||||||||||| || |||| ||||||    
T  30613113 gtattgtttgatttaagagagatagaagagaaatagagaagagagaagt 30613161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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