View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11429_low_1 (Length: 383)
Name: NF11429_low_1
Description: NF11429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11429_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 52721654 - 52722005
Alignment:
| Q |
17 |
cagaaccaccggaactgacaagaagaagtactctcgtgagatgatggagtctatgaggtttgtgaatgtctctcagcagctcaaattctggaaaacaatc |
116 |
Q |
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| T |
52721654 |
cagaaccaccggaactgacaagaagaagtactctcgagagatgatggagtctatgaggtttgtgaatgtctctcagcagctcaaattctggaaaacaatc |
52721753 |
T |
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| Q |
117 |
tacaccgcgcttcaatctgcttttgctgatgagtatgatacattggtcattgccgccaccgctcacaacaaccgtcactctcttccgttccatcccaaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52721754 |
tacaccgcgcttcaatctgcttttgctgatgagtatgatacattggtcgttgccgccaccgctcacaacaaccgtcactctcttccgttccatcccaaca |
52721853 |
T |
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| Q |
217 |
agaaaccaattctcactggtcagtactcttttctttcttggataatcatattcgattcttgattccagttttgttcattgcgctaaataaatttatggaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52721854 |
agaaaccaattctcactggtcagtactcttttctttcttggataatcatattcgattcttgattccagttttgttcattgcgctaaataaatttaaggaa |
52721953 |
T |
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| Q |
317 |
tttctcatatttgtgtgtgattgacccagattgcatttgtgtttgtattaag |
368 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52721954 |
tttctcatatttgtgtgagattgacccagattgcatttgtgtttgtattaag |
52722005 |
T |
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Back To:
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Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 163
Target Start/End: Original strand, 32822985 - 32823112
Alignment:
| Q |
36 |
aagaagaagtactctcgtgagatgatggagtctatgaggtttgtgaatgtctctcagcagctcaaattctggaaaacaatctacaccgcgcttcaatctg |
135 |
Q |
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||||||||||||||||| ||| ||||||| ||| |||||||||||||||| | ||||| |||||||||||| | ||||||| |||| ||||||||| |
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| T |
32822985 |
aagaagaagtactctcgagaggtgatggaagctacgaggtttgtgaatgtccccgagcagtgcaaattctggaatagaatctacgccgcacttcaatctt |
32823084 |
T |
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| Q |
136 |
cttttgctgatgagtatgatacattggt |
163 |
Q |
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| T |
32823085 |
cctttgctgatgattatgatacgttggt |
32823112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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