View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1142_high_10 (Length: 251)

Name: NF1142_high_10
Description: NF1142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1142_high_10
NF1142_high_10
[»] chr6 (1 HSPs)
chr6 (29-251)||(35091758-35091980)
[»] chr2 (3 HSPs)
chr2 (28-139)||(9259579-9259689)
chr2 (31-137)||(17139937-17140043)
chr2 (49-131)||(31392295-31392377)
[»] chr3 (3 HSPs)
chr3 (31-139)||(1580996-1581105)
chr3 (31-139)||(41404207-41404316)
chr3 (94-139)||(3663805-3663850)
[»] chr1 (2 HSPs)
chr1 (49-139)||(3290493-3290583)
chr1 (31-131)||(32984385-32984486)
[»] chr7 (4 HSPs)
chr7 (31-139)||(30464521-30464630)
chr7 (31-125)||(8160939-8161032)
chr7 (31-139)||(39827621-39827730)
chr7 (157-248)||(30464311-30464402)
[»] chr8 (1 HSPs)
chr8 (93-148)||(12735460-12735515)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 35091980 - 35091758
Alignment:
Q  29 cgaattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgcgtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttgg 128  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35091980 cgaattgctagagagaggggtttgcgaaggttgagttgcacgtcgattcgagtgtggtggtgtgtaccctgcacacaactaaggatggaagtgttgttgg 35091881  T
Q  129 ttgacgtctcaatcacaaaaatcactgagttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaac 228  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||    
T  35091880 ttgacgtctcaatcaaaaaaatcactgagttgcgtgtgtatgagtagtgtccaattaggcttaattctttggtgttagctgatgttatcgagataacaac 35091781  T
Q  229 ccctaaaatcatctatgtttagt 251  Q
     ||||||||||||||||||||||    
T  35091780 tcctaaaatcatctatgtttagt 35091758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 9259689 - 9259579
Alignment:
Q  28 ccgaattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgcgtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttg 127  Q
    |||||||||||||||||||  ||||||||||||||||| || || |||||| ||||||||||| | || ||| |||||||||||||||||||||||||||    
T  9259689 ccgaattgctagagagaggt-tttgcgaaggttgagttacacgttgattcgagtgtggtggtgaggactctgtagacaactaaggatggaagtgttgttg 9259591  T
Q  128 gttgacgtctca 139  Q
    |||| |||||||    
T  9259590 gttggcgtctca 9259579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 17140043 - 17139937
Alignment:
Q  31 aattgctagagagaggggtttg-cgaaggttgagttgcaagtcgattcgcgtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 129  Q
    ||||||||||||||| |||||  ||||||||||||| || || |||||| ||||||||||||| || ||||||||||||||||||||||||||| |||||    
T  17140043 aattgctagagagagaggtttttcgaaggttgagttacatgttgattcgagtgtggtggtgtggactctgcagacaactaaggatggaagtgtt-ttggt 17139945  T
Q  130 tgacgtct 137  Q
    || |||||    
T  17139944 tggcgtct 17139937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 31392295 - 31392377
Alignment:
Q  49 tttgcgaaggttgagttgcaagtcgattcgcgtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggttg 131  Q
    ||||| |||||||||||||| |  |||||  |||| |||||| | |||||||||| |||||||||||||||| ||||||||||    
T  31392295 tttgcaaaggttgagttgcacgctgattcaagtgtagtggtgcggaccctgcagataactaaggatggaagtattgttggttg 31392377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 1580996 - 1581105
Alignment:
Q  31 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgcgtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 129  Q
    ||||||||||||||| ||||| || |||||||||||||| || |||||  |||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  1580996 aattgctagagagagaggttttgcaaaggttgagttgcacgttgattcaagtgtggtggtgcataccctacagacaactaaggatggaagtgttgttggt 1581095  T
Q  130 tgacgtctca 139  Q
    || |||||||    
T  1581096 tggcgtctca 1581105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 41404316 - 41404207
Alignment:
Q  31 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgcgtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 129  Q
    ||||| ||||||||| ||||| ||||||||||||||||| || |||| | |||||||||||  ||||||||| |||||| ||||||||||||||||||||    
T  41404316 aattgttagagagagaggttttgcgaaggttgagttgcatgttgatttgagtgtggtggtgcataccctgcaaacaacttaggatggaagtgttgttggt 41404217  T
Q  130 tgacgtctca 139  Q
    || |||||||    
T  41404216 tggcgtctca 41404207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 3663850 - 3663805
Alignment:
Q  94 accctgcagacaactaaggatggaagtgttgttggttgacgtctca 139  Q
    |||||||| |||||||| |||||||||||||||||||| |||||||    
T  3663850 accctgcaaacaactaaagatggaagtgttgttggttggcgtctca 3663805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 3290493 - 3290583
Alignment:
Q  49 tttgcgaaggttgagttgcaagtcgattcgcgtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggttgacgtctca 139  Q
    |||||||||||||||||||| || |||||| ||||||| ||| |||||||||||||||  ||||||||||||||||||||||| |||||||    
T  3290493 tttgcgaaggttgagttgcacgttgattcgagtgtggttgtgcgtaccctgcagacaatcaaggatggaagtgttgttggttggcgtctca 3290583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 32984385 - 32984486
Alignment:
Q  31 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgcgtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 129  Q
    |||||||||| |||| ||||| || |||||||||||||| || |||||  |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  32984385 aattgctagacagagaggttttgcaaaggttgagttgcacgttgattcaagtgtggtggtgcataccctgcagacaactaaggatggaagtgttgttggt 32984484  T
Q  130 tg 131  Q
    ||    
T  32984485 tg 32984486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 30464630 - 30464521
Alignment:
Q  31 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgcgtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 129  Q
    ||||||||||||||| ||||| || || ||||||||||| ||  ||||  |||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  30464630 aattgctagagagagaggttttgcaaaagttgagttgcacgttaattcaagtgtggtggtgcataccctgcagacaactaagaatggaagtgttgttggt 30464531  T
Q  130 tgacgtctca 139  Q
    || |||||||    
T  30464530 tggcgtctca 30464521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 8161032 - 8160939
Alignment:
Q  31 aattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgcgtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgt 125  Q
    |||| |||||||||||  ||||| || |||||||||||||| |||||  |||||||||||  |||||||||||||||||||||| ||||||||||    
T  8161032 aatttctagagagaggt-tttgcaaaagttgagttgcaagttgattcaagtgtggtggtgcataccctgcagacaactaaggatagaagtgttgt 8160939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 39827730 - 39827621
Alignment:
Q  31 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgcgtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 129  Q
    ||||||||||||||| ||||| || || |||||||| || || |||||| |||||||||||  || | |||| ||||||||||||||| |||||| ||||    
T  39827730 aattgctagagagagaggtttagcaaaagttgagtttcacgttgattcgagtgtggtggtgcatagcttgcaaacaactaaggatggaggtgttgctggt 39827631  T
Q  130 tgacgtctca 139  Q
    || |||||||    
T  39827630 tggcgtctca 39827621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 30464402 - 30464311
Alignment:
Q  157 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgttt 248  Q
    ||||| |||||||||||||||||||  ||| ||||  ||| |||||||| |||||||||| | |||| | ||||||||| |||||| |||||    
T  30464402 gttgcgtgtgtatgagtagtgtccagctaggcttatttctctggtgttagctgatgttatggggatagcgacccctaaagtcatctttgttt 30464311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 12735515 - 12735460
Alignment:
Q  93 taccctgcagacaactaaggatggaagtgttgttggttgacgtctcaatcacaaaa 148  Q
    |||||| || |||||||| |||| ||||||||||||||||||||||| ||| ||||    
T  12735515 taccctacaaacaactaaagatgaaagtgttgttggttgacgtctcattcaaaaaa 12735460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University