View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1142_high_2 (Length: 428)
Name: NF1142_high_2
Description: NF1142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1142_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 36135981 - 36135639
Alignment:
| Q |
1 |
ccgcagagaatcaataatattgatgtgtttgaaaacaaaatgcttctcgtgattttcctggttgcaccaaccataatagaacttacaagcaataagaaag |
100 |
Q |
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| T |
36135981 |
ccgcagagaatcaataatattgatgtgtttggaaacaaaatgcttctcgtgattttcctggttgcaccaaccataacagaacttacaagcaataagaaag |
36135882 |
T |
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| Q |
101 |
ctttctgtgagcagtaagtcttggcgatcttttcttggacatccggctgtcacgattttgaattcaggatnnnnnnngagagtaaaggctatcattcata |
200 |
Q |
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| T |
36135881 |
ctttctgtgagcagtaagtcttggcgatcttttcttggacatccggctgtcgcgattttgaattcaggataaaaaaagagagtaaaggctatcattcata |
36135782 |
T |
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| Q |
201 |
atgaagagaacatattattcaagatatatgatcaactcaatcatatatgcataacaataggatcaaaataacataaatttaattttcttattcttcataa |
300 |
Q |
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| T |
36135781 |
atgaagagaacatattattcaagatatatgatcaactcaatcatatatgcataacaataggatcaaaataacataaatttaattttcttattcttcataa |
36135682 |
T |
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| Q |
301 |
gccatattaatgttaatatatacatcaaaataatcaagtttgt |
343 |
Q |
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| T |
36135681 |
gccatattaatgttaatatatacatcaaaataatcaagtttgt |
36135639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 41337533 - 41337294
Alignment:
| Q |
3 |
gcagagaatcaataatattgatgtgtttgaaaacaaaatgcttctcgtgattttcctggttgcaccaaccataatagaacttacaagcaataagaaagct |
102 |
Q |
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| T |
41337533 |
gcagaggatcaataatattgatgtgtttggaaacaaaatgcttctctcgatttttctggttgcgccaaccataacagaactttgaagcaataagaaagct |
41337434 |
T |
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| Q |
103 |
ttctgtgagcagtaagtcttggcgatcttttcttggacatccggctgtcacgattttgaattcagga--tnnnnnnngagagtaaaggctatcattcata |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||| | ||| || | ||||||||||||| | |||||||| ||||||||||||| |
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| T |
41337433 |
ttctgtgagcagcaagtcttggcgatcttttcttggacaatcagctatcgcaattttgaattcagaaagaaaaaaaaaagagtaaatgctatcattcata |
41337334 |
T |
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| Q |
201 |
atgaagagaacatattattcaagatatatgatcaactcaa |
240 |
Q |
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| T |
41337333 |
atgaagagaacatattattcaagatatatgatcaactcaa |
41337294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 253 - 343
Target Start/End: Complemental strand, 41337161 - 41337071
Alignment:
| Q |
253 |
aacaataggatcaaaataacataaatttaattttcttattcttcataagccatattaatgttaatatatacatcaaaataatcaagtttgt |
343 |
Q |
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||||||| |||||||||||||||||||| || ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41337161 |
aacaataagatcaaaataacataaattttatcttcttatccttcataagccatattaatattaatatatacatcaaaataatcaagtttgt |
41337071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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