View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1142_high_3 (Length: 373)
Name: NF1142_high_3
Description: NF1142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1142_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 38866389 - 38866702
Alignment:
| Q |
1 |
cttacacagatttttctctcggacgtacatacattcttttatgtagcacagacgtggacacgtcgacaccgataatattttgnnnnnnntgacataattc |
100 |
Q |
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| T |
38866389 |
cttacacagatttttctctcggacgtatatacattcttttatgtagcacagacgtggacacgtcgacaccgataatattttgaaaaaaatgacataattc |
38866488 |
T |
|
| Q |
101 |
aatgtaatttatatgtgtcagtgttgtgtcggacatgagtatatgtgtttcatagattcttccaaagtaagaatattgtaaaaacatataactcttctat |
200 |
Q |
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| T |
38866489 |
aatgtaatttatatgtgtc-----------gga-atgagtatatgtgtttcatagattcttccaaagtaagaatattgtaaaaacatataactcttctat |
38866576 |
T |
|
| Q |
201 |
agctgtgaatcacagctatagtaatacataattcacaaggcattgaatcgatccagtattactattttagacagattattatactgatagatggtataaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38866577 |
agctgtgaatcacagctatagtaatacataattcacaaggcattgaatcaatccagtattactattttagacagattattatactgatagatggtataaa |
38866676 |
T |
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| Q |
301 |
aatactttcattcattgagtgagttc |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
38866677 |
aatactttcattcattgagtgagttc |
38866702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 261 - 316
Target Start/End: Complemental strand, 38157782 - 38157724
Alignment:
| Q |
261 |
actattttagacagattattatactgat---agatggtataaaaatactttcattcatt |
316 |
Q |
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| T |
38157782 |
actattttagacagattattaaactgatcatagatggtataaaaatactttcattcatt |
38157724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 38749688 - 38749554
Alignment:
| Q |
1 |
cttacacagatttttctctcggacgtacatacattcttt--tatgtagcacagacgtggacacgtcgacaccgataatattttgnnnnnnntgacataat |
98 |
Q |
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|||| ||||||||| ||||||||| |||| ||||||||| | || |||||| || ||||| |||||||||||||||| |||| ||||||||| |
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| T |
38749688 |
cttaaacagattttcctctcggacatacaaacattctttcctctgaagcacaaacacggacatgtcgacaccgataataatttgaaaaaa-tgacataat |
38749590 |
T |
|
| Q |
99 |
tcaatgtaatttatatgtgtcagtgttgtgtcggaca |
135 |
Q |
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| T |
38749589 |
tcaatgtaa-ttatatgtgttggtgttgtgtcggaca |
38749554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 38749513 - 38749462
Alignment:
| Q |
142 |
tatgtgtttcatagattcttccaaagtaa-gaatattgtaaaaacatataac |
192 |
Q |
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|
| T |
38749513 |
tatgtgtttcatagattcctccaaagtaaggattattgtaaaaacatataac |
38749462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 316
Target Start/End: Complemental strand, 29169776 - 29169718
Alignment:
| Q |
261 |
actattttagacagattattatactgata---gatggtataaaaatactttcattcatt |
316 |
Q |
| |
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||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||| |
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|
| T |
29169776 |
actatttcagacagattattaaactgataatagatgttataaaaatactttcattcatt |
29169718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 41558689 - 41558645
Alignment:
| Q |
90 |
tgacataattcaatgtaatttatatgtgtcagtgttgtgtcggaca |
135 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||| |||||||||| |
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|
| T |
41558689 |
tgacataattcaatgtaa-ttaaatgtgtcagtgtcgtgtcggaca |
41558645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 18513276 - 18513232
Alignment:
| Q |
90 |
tgacataattcaatgtaatttatatgtgtcagtgttgtgtcggaca |
135 |
Q |
| |
|
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| T |
18513276 |
tgacataattcaatgtaatc-atatgtgtcagtgttgtgtcggaca |
18513232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 316
Target Start/End: Complemental strand, 27463433 - 27463400
Alignment:
| Q |
283 |
actgatagatggtataaaaatactttcattcatt |
316 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
27463433 |
actgatagatggtataaaaataatttcattcatt |
27463400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 9024211 - 9024167
Alignment:
| Q |
90 |
tgacataattcaatgtaatttatatgtgtcagtgttgtgtcggaca |
135 |
Q |
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| T |
9024211 |
tgacataattcaatgtaatc-atatgtgtcagtgtcgtgtcggaca |
9024167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 7948983 - 7949030
Alignment:
| Q |
90 |
tgacataattcaatgtaatttatatgtgtcagtgttgtgtcggacatga |
138 |
Q |
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| T |
7948983 |
tgacataattcaatgtaa-ttgtatgtgtcagagtcgtgtcggacatga |
7949030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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