View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1142_low_1 (Length: 544)
Name: NF1142_low_1
Description: NF1142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1142_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Original strand, 49203437 - 49203870
Alignment:
| Q |
17 |
tgggtgatatgagcccagaaaaagatgatgtgcagttgaatttagccaagagttgtgaggaattgaagtcaaggctttgtatgatggattccaagctaag |
116 |
Q |
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| T |
49203437 |
tgggtgatatgagcccagaaaaagatgatgtgcagttgaatttagccaagagttgtgaggaattgaagtcaaggctttctatgatggattccaagctaag |
49203536 |
T |
|
| Q |
117 |
agaggttagagatcctgaatttagatcaatcatcatgacagtaagttttctagtccatgtgtccgtcatactttaacataattctctcaaaatgttggct |
216 |
Q |
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| T |
49203537 |
agaggttagagatcctgaatttagatcaatcatcatgacagtaagttttctagtccatgtgcccgtcatactttaacataattctctcaaaatgttggct |
49203636 |
T |
|
| Q |
217 |
gataaatatctaaactttattagactactaccttaaatgggatttgatggaggaaatgagtaaacccaatgtaatttaaagctatctaatatttgttaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49203637 |
gataaatatctaaactttattagactactaccttaaatgggatttgatggaggaaatgagtaaacccaatgtaatttaaagctatctaatatttgttaac |
49203736 |
T |
|
| Q |
317 |
cccgcattatactaatatatgtataaataaggctaggatcatatcataatggcatattgttttgctccctgtgagccaaaaagag--agataatttatca |
414 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49203737 |
cccacattatactaatatatgtataaataaggctaggatcatatcataatggcatattgttttgctccctgtgagccaaaaagagaaagataatttatca |
49203836 |
T |
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| Q |
415 |
tcaactatagattcttgacttcatttaaagttaa |
448 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
49203837 |
tcaactatagattcttgacttcatttaaagttaa |
49203870 |
T |
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