View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1142_low_12 (Length: 293)
Name: NF1142_low_12
Description: NF1142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1142_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 27710126 - 27710399
Alignment:
| Q |
7 |
gtcttcgctttgtgtcatcacgtacaagaaaaattatgcccaaacagtcaacgcatccgctctcaaatgttaacttcttattagcaacgttgagtctcaa |
106 |
Q |
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| T |
27710126 |
gtcttcgctttgtgtcttcacgtacaagaaaaattatgcccaaacagtcaacgcatccgctctcaaatgttaacttcttattagcaacgttg-gtctcaa |
27710224 |
T |
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| Q |
107 |
atctatctatattagtacagtttctctttttcgcacttcatgcctttaaagcttcaaagcttctatatacaaaaaacaacatggtttcaaaccaaatatc |
206 |
Q |
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| T |
27710225 |
atctatctatattagtacagtttctctttttcacacttcatgcctttaaagcttcaaagcttctatatacaaaaaacaacatggtttcaaaccaaatatc |
27710324 |
T |
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| Q |
207 |
caacttatttaatttgtacctaattacataacataactgcaaaatgaagataaacatgtggatttgataggcctt |
281 |
Q |
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| T |
27710325 |
caacttatttaatttgtatctaattacataacataactgcaaaatgaagataaacatgtggatttgataggcctt |
27710399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 27700113 - 27700056
Alignment:
| Q |
224 |
acctaattacataacataactgcaaaatgaagataaacatgtggatttgataggcctt |
281 |
Q |
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| T |
27700113 |
acctaattacataacataactgtaaaatgaagataaacatgtgaatttgttaagcctt |
27700056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 27700168 - 27700111
Alignment:
| Q |
142 |
cttcatgcctttaaagcttcaaagcttctatatacaaaaaacaacatggtttcaaacc |
199 |
Q |
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| T |
27700168 |
cttcgtgcctttaaagcatcaaagcttctatatacaaaaaccaacatagattcaaacc |
27700111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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