View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1142_low_14 (Length: 285)

Name: NF1142_low_14
Description: NF1142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1142_low_14
NF1142_low_14
[»] chr7 (3 HSPs)
chr7 (43-285)||(44968695-44968937)
chr7 (143-226)||(35324087-35324170)
chr7 (74-135)||(35324007-35324068)
[»] chr5 (4 HSPs)
chr5 (43-259)||(28873578-28873799)
chr5 (43-259)||(28872139-28872354)
chr5 (143-251)||(3031398-3031507)
chr5 (163-232)||(2357748-2357817)
[»] chr6 (2 HSPs)
chr6 (143-251)||(369231-369339)
chr6 (147-251)||(367386-367490)
[»] chr2 (4 HSPs)
chr2 (143-251)||(4284993-4285102)
chr2 (143-251)||(5989346-5989454)
chr2 (143-251)||(5983391-5983499)
chr2 (204-251)||(1645027-1645075)
[»] scaffold0014 (1 HSPs)
scaffold0014 (89-209)||(34386-34505)
[»] chr8 (1 HSPs)
chr8 (143-221)||(14685292-14685370)
[»] chr3 (3 HSPs)
chr3 (143-251)||(12221719-12221827)
chr3 (195-251)||(11171991-11172047)
chr3 (143-205)||(27237247-27237309)
[»] chr4 (1 HSPs)
chr4 (192-251)||(53008170-53008229)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 43 - 285
Target Start/End: Original strand, 44968695 - 44968937
Alignment:
Q  43 gagatgaaaataaaacttgtaaattttatttatgaattgaacttgctatttacaagagctatgaagtatttatacatcaagcgatgtaacaaacaactag 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44968695 gagatgaaaataaaacttgtaaattttatttatgaattgaacttgctatttacaagagctatgaagtatttatacatcaaacgatgtaacaaacaactag 44968794  T
Q  143 aacaaactcataactttacgtgcaagaaacttgagttagttacttcacatgcaaatttctaaacaaactactaaacaaagataagactaattctaactaa 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44968795 aacaaactcataactttacgtgcaagaaacttgagttagttacttcacatgcaagtttctaaacaaactactaaacaaagataagactaattctaactaa 44968894  T
Q  243 aatgaattaataatccatcaaagaccttaatttggatctcgtt 285  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  44968895 aatgaattaataattcatcaaagaccttaatttggatctcgtt 44968937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 35324087 - 35324170
Alignment:
Q  143 aacaaactcataactttacgtgcaagaaacttgagttagttacttcacatgcaaatttctaaacaaactactaaacaaagataa 226  Q
    |||||||| || |||| || |||||| ||||||||||||||||||||  ||||| ||||||||||||||||||| |||||||||    
T  35324087 aacaaacttattacttcacatgcaagtaacttgagttagttacttcaagtgcaagtttctaaacaaactactaatcaaagataa 35324170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 35324007 - 35324068
Alignment:
Q  74 atgaattgaacttgctatttacaagagctatgaagtatttatacatcaagcgatgtaacaaa 135  Q
    |||||||||| || |||||||||||||  |||| |||| ||||||||||| |||||||||||    
T  35324007 atgaattgaaattactatttacaagagtaatgaggtatatatacatcaagtgatgtaacaaa 35324068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 9e-79; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 43 - 259
Target Start/End: Original strand, 28873578 - 28873799
Alignment:
Q  43 gagatgaaaataaaacttgtaaattttatttatgaa-ttgaacttgctatttacaagagctatgaagtatttatacatcaagcgatgtaacaa----aca 137  Q
    |||||||||||||||||||||||||||||| ||||| || ||||| || ||||||||||| ||||||||||||||||||||| ||||||||||    |||    
T  28873578 gagatgaaaataaaacttgtaaattttattgatgaaattaaacttactctttacaagagcaatgaagtatttatacatcaagtgatgtaacaacaaaaca 28873677  T
Q  138 actagaacaaactcataactttacgtgcaagaaacttgagttagttacttcacatgcaaatttctaaacaaactactaaacaaagataagactaattcta 237  Q
    |||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  28873678 actaaaacaaactcataacttcacgtgcaagtaacttgagttagttacttcacatgcaagtttctaaacaaactgctaaacaaagataagactaattcta 28873777  T
Q  238 actaaaatgaattaataatcca 259  Q
    |||||||||||||| |||||||    
T  28873778 actaaaatgaattactaatcca 28873799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 43 - 259
Target Start/End: Original strand, 28872139 - 28872354
Alignment:
Q  43 gagatgaaaataaaacttgtaaattttatttatgaattgaacttgctatttacaagagctatgaagtatttatacatcaagcgatgtaacaaa-caacta 141  Q
    |||| ||||||||||||||||||||||||| || |||||||||| |||||||||||||| ||||||||||||||||||  | ||||||||||| ||||||    
T  28872139 gagacgaaaataaaacttgtaaattttattgataaattgaacttactatttacaagagcaatgaagtatttatacatc--gtgatgtaacaaaacaacta 28872236  T
Q  142 gaacaaactcataactttacgtgcaagaaacttgagttagttacttcacatgcaaatttctaaacaaactactaaacaaagataagactaattctaacta 241  Q
     |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| ||    
T  28872237 aaacaaactcataacttcacgtgcaagtaacttgagttagttacttcacatgcaagtttctaaacaaactgttaaacaaagataagactaattctaaata 28872336  T
Q  242 aaatgaattaataatcca 259  Q
    |||||||||| |||||||    
T  28872337 aaatgaattactaatcca 28872354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 3031507 - 3031398
Alignment:
Q  143 aacaaactcataactttacgtgcaagaaacttgagttagttacttcacatgcaaatttctaaacaaactactaaacaaagataagactaattctaactaa 242  Q
    ||||||||| |||||| ||||||||| |||   ||||||||||||||||||||| | ||||||||||||| ||| ||||||||| |||||||||||||||    
T  3031507 aacaaactcttaacttcacgtgcaagtaacaatagttagttacttcacatgcaagtatctaaacaaactattaagcaaagataaaactaattctaactaa 3031408  T
Q  243 -aatgaatta 251  Q
     |||||||||    
T  3031407 taatgaatta 3031398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 2357748 - 2357817
Alignment:
Q  163 tgcaagaaacttgagttagttacttcacatgcaaatttctaaacaaactactaaacaaagataagactaa 232  Q
    |||||| ||||||||||||||||||||  ||||| |||||||| |||||||||| ||||||||| |||||    
T  2357748 tgcaagtaacttgagttagttacttcaagtgcaagtttctaaataaactactaatcaaagataaaactaa 2357817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 369231 - 369339
Alignment:
Q  143 aacaaactcataactttacgtgcaagaaacttgagttagttacttcacatgcaaatttctaaacaaactactaaacaaagataagactaattctaactaa 242  Q
    ||||||||| |||||| ||||||||| |||   ||||||||||||||||||||| |||||||||| |||| ||| ||||||||| |||||||||||||||    
T  369231 aacaaactcttaacttcacgtgcaagtaacaatagttagttacttcacatgcaagtttctaaacagactattaagcaaagataaaactaattctaactaa 369330  T
Q  243 aatgaatta 251  Q
    |||||||||    
T  369331 aatgaatta 369339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 367386 - 367490
Alignment:
Q  147 aactcataactttacgtgcaagaaacttgagttagttacttcacatgcaaatttctaaacaaactactaaacaaagataagactaattctaactaaaatg 246  Q
    ||||| || ||| ||||||||| |||   ||||||||||||||||||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  367386 aactcttaccttcacgtgcaagtaacaatagttagttacttcacatgcaagtttctaaacaaactattaagcaaagataaaactaattctaactaaaatg 367485  T
Q  247 aatta 251  Q
    |||||    
T  367486 aatta 367490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 4285102 - 4284993
Alignment:
Q  143 aacaaactcataactttacgtgcaagaaacttgagttagttacttcacatgcaaatttctaaacaaactactaaacaaagataagactaattctaactaa 242  Q
    ||||||||| |||||| ||||||||| |||   ||||||||||||||||||||| | ||||||||||||| ||| ||||||||| |||||||||||| ||    
T  4285102 aacaaactcttaacttcacgtgcaagtaacaatagttagttacttcacatgcaagtatctaaacaaactattaagcaaagataaaactaattctaaccaa 4285003  T
Q  243 -aatgaatta 251  Q
     |||||||||    
T  4285002 taatgaatta 4284993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 5989454 - 5989346
Alignment:
Q  143 aacaaactcataactttacgtgcaagaaacttgagttagttacttcacatgcaaatttctaaacaaactactaaacaaagataagactaattctaactaa 242  Q
    |||||||| || |||| || |||||| ||||||||||||||||||||  ||||| |||||||||||||||||||  ||||||||  ||||  ||||||||    
T  5989454 aacaaacttattacttcacatgcaagtaacttgagttagttacttcaagtgcaagtttctaaacaaactactaattaaagataaagctaaaactaactaa 5989355  T
Q  243 aatgaatta 251  Q
    | |||||||    
T  5989354 actgaatta 5989346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 5983499 - 5983391
Alignment:
Q  143 aacaaactcataactttacgtgcaagaaacttgagttagttacttcacatgcaaatttctaaacaaactactaaacaaagataagactaattctaactaa 242  Q
    |||||||| || |||| || |||||| ||||||| ||||||||||||  ||||| ||||||||||||||||||| |||| ||||  ||||  ||||||||    
T  5983499 aacaaacttattacttcacatgcaagtaacttgatttagttacttcaagtgcaagtttctaaacaaactactaatcaaaaataaagctaaaactaactaa 5983400  T
Q  243 aatgaatta 251  Q
    | |||||||    
T  5983399 actgaatta 5983391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 1645075 - 1645027
Alignment:
Q  204 aacaaactactaaacaaagataaga-ctaattctaactaaaatgaatta 251  Q
    ||||||||| ||| ||||||||| | |||||||||||||||||||||||    
T  1645075 aacaaactattaagcaaagataaaaactaattctaactaaaatgaatta 1645027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 34505 - 34386
Alignment:
Q  89 tatttacaagagctatgaagtatttatacatcaagcgatgtaacaaacaactag-aacaaactcataactttacgtgcaagaaacttgagttagttactt 187  Q
    ||||||||| |||||| |||||||||||||||||| |||||||||||  |||   ||||||||||| |||| || | |||| ||||| ||||||||||||    
T  34505 tatttacaatagctataaagtatttatacatcaagtgatgtaacaaa--actcctaacaaactcattacttcacatacaagtaactttagttagttactt 34408  T
Q  188 cacatgcaaatttctaaacaaa 209  Q
    ||||||||| | ||||||||||    
T  34407 cacatgcaagtatctaaacaaa 34386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 14685370 - 14685292
Alignment:
Q  143 aacaaactcataactttacgtgcaagaaacttgagttagttacttcacatgcaaatttctaaacaaactactaaacaaa 221  Q
    |||||||| || |||| || |||||| ||||||||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  14685370 aacaaacttatcacttcacatgcaagtaacttgagttagttacttcaagtgcaagtttctaaacaaactactaatcaaa 14685292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 12221719 - 12221827
Alignment:
Q  143 aacaaactcataactttacgtgcaagaaacttgagttagttacttcacatgcaaatttctaaacaaactactaaacaaagataagactaattctaactaa 242  Q
    ||||||||||| ||||  |  ||||| ||||||||||||||||||||  |||||  |  |  |||||||||||| ||||||||| |||||||| ||||||    
T  12221719 aacaaactcattacttctcacgcaagtaacttgagttagttacttcatgtgcaagctattttacaaactactaaccaaagataaaactaattccaactaa 12221818  T
Q  243 aatgaatta 251  Q
    |||||||||    
T  12221819 aatgaatta 12221827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 11172047 - 11171991
Alignment:
Q  195 aaatttctaaacaaactactaaacaaagataagactaattctaactaaaatgaatta 251  Q
    |||||||||||||||||||||| |||||||||  ||||  ||||||||| |||||||    
T  11172047 aaatttctaaacaaactactaatcaaagataaagctaaaactaactaaactgaatta 11171991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 27237309 - 27237247
Alignment:
Q  143 aacaaactcataactttacgtgcaagaaacttgagttagttacttcacatgcaaatttctaaa 205  Q
    |||||||| || |||| || |||||| ||||||||||||||||||||  ||||| ||||||||    
T  27237309 aacaaacttattacttcacatgcaagtaacttgagttagttacttcaagtgcaagtttctaaa 27237247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 53008229 - 53008170
Alignment:
Q  192 tgcaaatttctaaacaaactactaaacaaagataagactaattctaactaaaatgaatta 251  Q
    ||||| ||||||||||||||||||| |||||||||  ||||  ||||||||| |||||||    
T  53008229 tgcaagtttctaaacaaactactaatcaaagataaagctaaaactaactaaactgaatta 53008170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University