View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1142_low_16 (Length: 280)
Name: NF1142_low_16
Description: NF1142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1142_low_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 50 - 280
Target Start/End: Complemental strand, 24505847 - 24505618
Alignment:
| Q |
50 |
agattttaggttctttatttattcccctggtcagggccaccattgagaaaattcccctgataaacactaataaggaggataccctcatgtggatgcatga |
149 |
Q |
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| T |
24505847 |
agattttaggttctttatttattcccctggacagggccaccattgagaaaattcccctgataaacactaataaggaggataccctcatgtggatgcatga |
24505748 |
T |
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| Q |
150 |
accgaacggaaactatacgggttaaaagtggttacaaggctatccaaatttggaaaactcaagctatcaacactctctctactagctacactgacatgaa |
249 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24505747 |
accgaacggaaactatac-ggttaaaagtggttacaaggctatccaagtttggaaaactcaagctatcaacactccctctactagctacactgacatgaa |
24505649 |
T |
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| Q |
250 |
agtttggaagaaactatgggttcttcatact |
280 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
24505648 |
agtttggaagaaactatgggttcttcatact |
24505618 |
T |
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