View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1142_low_2 (Length: 448)
Name: NF1142_low_2
Description: NF1142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1142_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 30 - 442
Target Start/End: Complemental strand, 32039581 - 32039171
Alignment:
| Q |
30 |
tgttttagacttctgttgtaat--gtttgtaaaatctcttccatctgttctcttcgagtttttcttttcctgtaattatattattgggttgattcagtgt |
127 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32039581 |
tgttttagacttctgttgtaatatgtttgtaaaatctcttccatctgttctcttcgtgttttt----tcctgtaattatattattgggttgattcagtgt |
32039486 |
T |
|
| Q |
128 |
aactaatattgtaaaattgagaggaatgcaagcaattgatacattcattaattgcatatgtctttcattattaagagatgctctgcttcgagatccatca |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32039485 |
aactaatattgtaaaattgagaggaatgcaagcaatggatacattcattaattgcatgtgtctttcattattaagagatgctctgcttcgagatccatca |
32039386 |
T |
|
| Q |
228 |
aatattcacaagcttgtgccacccattttctgttgtaagtcgccaagttcatgtgtttgaatgtcatttaactattccagttgtgaaatgtctttaaatg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32039385 |
aatattcacaagcttgtgccacccattttctgctgtaagtcgccaagttcatgtgtttgaatgtcatttaactattccagttgtgaaatgtctttaaatg |
32039286 |
T |
|
| Q |
328 |
aagatataaattcttagtaggtccggggattatgctcagcaaatttattaaccgattatcttacaccatagaatcggttaaagatacgtaaagatagagg |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32039285 |
aagatataaattcttagtaggtccggggattatgctcagcaaatttattaaccgattatcttacaccatagaatcggttaaagatacgtaaagatagagg |
32039186 |
T |
|
| Q |
428 |
tataagtattatcta |
442 |
Q |
| |
|
||||| ||| ||||| |
|
|
| T |
32039185 |
tataaatataatcta |
32039171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University