View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1142_low_22 (Length: 250)
Name: NF1142_low_22
Description: NF1142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1142_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 6866642 - 6866838
Alignment:
| Q |
22 |
catcataaacaagaaactcttgtgagcattacacggatctgaaatatagagcacgtattcggtgttgggcaatacaatactagatcatgagtttaaaaac |
121 |
Q |
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| T |
6866642 |
catcataaacaagaaactcttgtgagcattacacggatctgaaatatagagcatgtattcggtgttgggcagtacaatactagatcatgagtttaaaaac |
6866741 |
T |
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| Q |
122 |
aaaaacaagaatcataatttattttttgacagagtactctctctgtcttatactatcaaatgcatgtttcttttctgaaatattttgtcgtttctaa |
218 |
Q |
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| T |
6866742 |
aaaaacaagaatcataatttattttttgacagagtactctctctgtcttatactatcaaatgcatgtttcttttctgaaatattttgtcgtttctaa |
6866838 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 243
Target Start/End: Complemental strand, 8361865 - 8361837
Alignment:
| Q |
215 |
ctaactgcaagtaacttggttctgtggtg |
243 |
Q |
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| T |
8361865 |
ctaactgcaagtaacttggttctgtggtg |
8361837 |
T |
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