View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1142_low_23 (Length: 250)
Name: NF1142_low_23
Description: NF1142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1142_low_23 |
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| [»] chr8 (4 HSPs) |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 29373246 - 29373005
Alignment:
| Q |
11 |
cacagactcaccatagcagaaaaatcaacaat--ccctgccactctgctggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagag |
108 |
Q |
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| T |
29373246 |
cacagacacaccatagcagaaaaatcaacagtggccctgccactctgctggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagag |
29373147 |
T |
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| Q |
109 |
acgaaaactccactacctcctcagtcactccctcgggttccaacaccactaataaaagaggccataaacaatcttcaatctactcaaagtccaatgctat |
208 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29373146 |
acgaaaactccactacctcctcagtcactctctcaggttccaacaccactcataaaagaggccataaacaatcttcaatctactcaaagtccaatgctat |
29373047 |
T |
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| Q |
209 |
gaaacaagcttgatttcttcaacaacctcatcaatatccttt |
250 |
Q |
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| T |
29373046 |
gaaacaagcttgatttcttcaacaacctcatcaatatccttt |
29373005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 10643011 - 10642960
Alignment:
| Q |
58 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
109 |
Q |
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| T |
10643011 |
ggaccagcagccaacaacaccaatcagacaccaaaacagacccaaacagaga |
10642960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 32712827 - 32712878
Alignment:
| Q |
58 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
109 |
Q |
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| T |
32712827 |
ggaccagcagccaacaacaccaatcgaacaccaaaacagacccaaacagaga |
32712878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 11682092 - 11682133
Alignment:
| Q |
53 |
ctgctggaccagcagccaacaaacccaatcggacaccaaaac |
94 |
Q |
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| T |
11682092 |
ctgctgaaccagcagccaacaataccaatcggacaccaaaac |
11682133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 3585 - 3534
Alignment:
| Q |
58 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
109 |
Q |
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| T |
3585 |
ggaccagcagccaacaacaccaatcggacaccaaaacagacccaaacagaga |
3534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 23923638 - 23923689
Alignment:
| Q |
58 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
109 |
Q |
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| T |
23923638 |
ggaccagcagccaacaacgccaatcggacaccaaaacagacccaaacagaga |
23923689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 23923520 - 23923561
Alignment:
| Q |
53 |
ctgctggaccagcagccaacaaacccaatcggacaccaaaac |
94 |
Q |
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| T |
23923520 |
ctgctggaccagcagccaacaacaccaattggacaccaaaac |
23923561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 17257131 - 17257070
Alignment:
| Q |
134 |
cactccctcgggttccaacaccactaataaaagaggccataaacaatcttcaatctactcaa |
195 |
Q |
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| T |
17257131 |
cactcccttgggttccaacaccactcgtaaaagaggcaagaagcaatcttcaacctactcaa |
17257070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 43441337 - 43441405
Alignment:
| Q |
134 |
cactccctcgggttccaacaccactaataaaagaggccataaacaatcttcaatctactcaaagtccaa |
202 |
Q |
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| T |
43441337 |
cactctctcggattccaacaccactcgtaaaagaagcaagaaactatcctcaatctactcaaagaccaa |
43441405 |
T |
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