View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1142_low_24 (Length: 249)
Name: NF1142_low_24
Description: NF1142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1142_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 42405826 - 42405960
Alignment:
| Q |
1 |
cttcacatttatttattaaattaaaaaacannnnnnnattactaattttccgtattttaagcactcttcacgacatacttgagttgggtttagtgttaga |
100 |
Q |
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| T |
42405826 |
cttcacatttatttattaaattaaaaaaagtttttttattactaattttccgtattttaagcactcttcacgacatacttgagttgggtttagtgttaga |
42405925 |
T |
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| Q |
101 |
gagagagggaggtgtactagtatgcgtagtcacac |
135 |
Q |
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| T |
42405926 |
gggagagggaggtgtactaatacgcgtagtcacac |
42405960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 42406024 - 42406063
Alignment:
| Q |
199 |
aacgaaacctaccattacttgcgctattttcactgttcat |
238 |
Q |
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| T |
42406024 |
aacgaaacctaccattacttgcgctattgtcaccgttcat |
42406063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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