View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1142_low_29 (Length: 215)
Name: NF1142_low_29
Description: NF1142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1142_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 106; Significance: 3e-53; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 2621594 - 2621715
Alignment:
| Q |
1 |
aaggaccaaatcgatgacaccccatctatcatgaataaagatcacatgcaaaacacgggtggttgtagactcgtgagtccatctaactctttcaactcaa |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621594 |
aaggaccaaaccgatgacaccccatctatcatgaatagagatcacatgcaaaacatgagtggttgtagactcgtgagtccatctaactctttcaactcaa |
2621693 |
T |
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| Q |
101 |
caacgcgaggcagtgatgatgt |
122 |
Q |
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| T |
2621694 |
caacgcgaggcagtgatgatgt |
2621715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 2590042 - 2590148
Alignment:
| Q |
16 |
gacaccccatctatcatgaataaagatcacatgcaaaacacgggtggttgtagactcgtgagtccatctaactctttcaactcaacaacgcgaggcagtg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| |||| ||| || |||||| |||| ||||||| || |
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| T |
2590042 |
gacaccccatctatcatgaataaagatcacatgcaaaacacgagtacttgtagactcgttagtccttctagctccttgaactcagcaacacgaggcaatg |
2590141 |
T |
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| Q |
116 |
atgatgt |
122 |
Q |
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||||||| |
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| T |
2590142 |
atgatgt |
2590148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 2571421 - 2571325
Alignment:
| Q |
4 |
gaccaaatcgatgacaccccatctatcatgaataaagatcacatgcaaaacacgggtggttgtagactcgtgagtccatctaactctttcaactcaa |
100 |
Q |
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||||||| |||||||| |||||||||||||||| |||||||||| ||| |||| || || ||||||| ||||||| |||| |||||||||||||| |
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| T |
2571421 |
gaccaaagtgatgacactccatctatcatgaatagagatcacatggaaatcacgagtagtcgtagacttgtgagtcattctagctctttcaactcaa |
2571325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 2643044 - 2642967
Alignment:
| Q |
23 |
catctatcatgaataaagatcacatgcaaaacacgggtggttgtagactcgtgagtccatctaactctttcaactcaa |
100 |
Q |
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| T |
2643044 |
catctatcatgaacagaggtcacatgcaaaacacgagtagtcgtagactcgtgagtcgttctagctctttcaactcaa |
2642967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 2674903 - 2674837
Alignment:
| Q |
13 |
gatgacaccccatctatcatgaataaagatcacatgcaaaacacgggtggttgtagactcgtgagtc |
79 |
Q |
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| T |
2674903 |
gatgacactccatctatcatgaatagaggtcacatgcaaaacacgagtagtcgtagactcgtaagtc |
2674837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 2449392 - 2449472
Alignment:
| Q |
17 |
acaccccatctatcatgaataaagatcacatgcaaaacacgggtggttgtagactcgtgagtccatctaactctttcaact |
97 |
Q |
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|||| ||| |||||||||||| ||||||||| ||||||||| || || || ||||||||||| |||| ||||||||||| |
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| T |
2449392 |
acactccacctatcatgaatagagatcacatccaaaacacgtgtagtgatacactcgtgagtcgttctagctctttcaact |
2449472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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