View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1142_low_30 (Length: 213)
Name: NF1142_low_30
Description: NF1142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1142_low_30 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 29199693 - 29199599
Alignment:
| Q |
1 |
agcataacacacaccgacagccacgaagaaaaagctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctttgtaaact |
95 |
Q |
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| T |
29199693 |
agcataacacacaccgacagccacgaagaaaaagctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctttgtaaact |
29199599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 19768172 - 19768134
Alignment:
| Q |
4 |
ataacacacaccgacagccacgaagaaaaagctccctca |
42 |
Q |
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| T |
19768172 |
ataacacacactgacagccacgaagaaaaagctccctca |
19768134 |
T |
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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 4351658 - 4351575
Alignment:
| Q |
5 |
taacacacaccgacagccacgaagaaaaa-gctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctt |
87 |
Q |
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| T |
4351658 |
taacacacactgactgccacgaaaaaaaaagctccctcacaaacgattcaagatctaacaatgcccatccgaaattgaatgctt |
4351575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 22082865 - 22082827
Alignment:
| Q |
4 |
ataacacacaccgacagccacgaagaaaaagctccctca |
42 |
Q |
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| T |
22082865 |
ataacacacactgacagccacgaagaaaaagctccctca |
22082827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 15387 - 15444
Alignment:
| Q |
30 |
aaaagctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctt |
87 |
Q |
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| T |
15387 |
aaaagctccctcacaaacgattcaagatctaacaatgcccatccgaaattaaatgctt |
15444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 51389771 - 51389855
Alignment:
| Q |
1 |
agcataacacacaccgacagccacgaagaaaaagctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgct |
86 |
Q |
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| T |
51389771 |
agcataacatacaccgatagccacaaagaaatag-tccctcacaaacgattcaaagtcttacaaagcccatccgaattcgaatgct |
51389855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 37617110 - 37617148
Alignment:
| Q |
4 |
ataacacacaccgacagccacgaagaaaaagctccctca |
42 |
Q |
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||||||||| | ||||||||||||||||||||||||||| |
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| T |
37617110 |
ataacacacgctgacagccacgaagaaaaagctccctca |
37617148 |
T |
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