View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1142_low_4 (Length: 447)
Name: NF1142_low_4
Description: NF1142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1142_low_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 3881025 - 3881471
Alignment:
| Q |
1 |
ccgattcatgatttgaatctcgatctgaaagctaagcaactcccttttttcatctacttctcagcttgctcttcgatctctcaatttaggaatatgccca |
100 |
Q |
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| T |
3881025 |
ccgattcatgatttgaatctcgatctgaaagctaagcaactcccttttttcatctacttctcagcttgctcttcgatctctcaatttaggaatatgccca |
3881124 |
T |
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| Q |
101 |
aaattaaacatactccgcattgaagcaacgttaatggtctccattgagttgaaaggatgtgacggactgtctgaagcatcccttaattgtcctctcttga |
200 |
Q |
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| T |
3881125 |
aaattaaacatactccgcattgaagcaacgttaatggtctccattgagttgaaaggatgtgacggactgtctgaagcatcccttaattgtcctctcttga |
3881224 |
T |
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| Q |
201 |
catctctggatgcttccttttgcaggtgatgctttatttgctagtttcttggttatcttgcttgcgtatggagtatggactgatgtttgttgttttgaat |
300 |
Q |
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| T |
3881225 |
catctctggatgcttccttttgcaggtgatgctttatttgctagtttcttggctatcctgcttgcgtatggagtatggactgatgtttgttgttttgaat |
3881324 |
T |
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| Q |
301 |
tatagtcaactcaatgacgattgcttgtctgcaacaacccgtgcctgtcgactaattgagtcattaatattaatgtcatgcccatcgattgggttagatg |
400 |
Q |
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| T |
3881325 |
tatagtcaactcaatgatgactgcttgtctgcaacaacccgtgcctgtcgactaattgagtcattaatattaatgtcatgcccatcgattgggttagatg |
3881424 |
T |
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| Q |
401 |
gactctgctccttgtattggctcccaaatttaaccctgcttgattta |
447 |
Q |
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| T |
3881425 |
gaccctgctccttgtattggctcccaaatttaaccctgcttgattta |
3881471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 3 - 447
Target Start/End: Original strand, 3867271 - 3867712
Alignment:
| Q |
3 |
gattcatgatttgaatctcgatctgaaagctaagcaactcccttttttcatctacttctcagcttgctcttcgatctctcaatttaggaatatgcccaaa |
102 |
Q |
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||||||||||||||||||| |||||| |||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
3867271 |
gattcatgatttgaatctcaatctgatagctaagcaacttccgtttttcatctacttctcaggttggtcttcgatctctcaatttaggaatatgcccaaa |
3867370 |
T |
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| Q |
103 |
attaaacatactccgcattgaagcaacgttaatggtctccattgagttgaaaggatgtgacggactgtctgaagcatcccttaattgtcctctcttgaca |
202 |
Q |
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| T |
3867371 |
attaaacatacttcgcattgaagcgatgttaatggtctcacttgagttgaaaggatgtggtggactgtctgaagcatcccttaattgtcctctcttgaca |
3867470 |
T |
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| Q |
203 |
tctctggatgcttccttttgcaggtgatgctttatttgctagtttcttggttatcttgcttgcgtatggagtatggactgatgtttgttgttttgaatta |
302 |
Q |
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| T |
3867471 |
tcactggatgcttccttttgcaggtgacgctttatctgctagtttcttggttatcctgcttatgtatggagtatgtactga---ttgttgttttgaatta |
3867567 |
T |
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| Q |
303 |
tagtcaactcaatgacgattgcttgtctgcaacaacccgtgcctgtcgactaattgagtcattaatattaatgtcatgcccatcgattgggttagatgga |
402 |
Q |
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|| ||||||| ||| || |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3867568 |
cagccaactcactgatgactgcttgtctgcaacaacccgtgcctgtccactgattgagtcattaatattaatgtcctgcccatcgattgggttagatgga |
3867667 |
T |
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| Q |
403 |
ctctgctccttgtattggctcccaaatttaaccctgcttgattta |
447 |
Q |
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||||| ||| || ||||||||||||||||| | |||||||||||| |
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| T |
3867668 |
ctctgttccctgcattggctcccaaatttagctctgcttgattta |
3867712 |
T |
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