View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1142_low_9 (Length: 344)
Name: NF1142_low_9
Description: NF1142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1142_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 93 - 274
Target Start/End: Original strand, 15761622 - 15761800
Alignment:
| Q |
93 |
agcaattacaaaaggtccaagactcactataaaccaaaactgatggcagcagaaacaaccaaccgttggcaaatagcagtccaggataaaataaaagcct |
192 |
Q |
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| T |
15761622 |
agcaattacaaaaggtccaagactcacta--aaccaaaactgatggcagcagaaacagccaaccgttagcaaatagcagtccaggataaaataaaagcct |
15761719 |
T |
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| Q |
193 |
agaattacaaaaacgcagcaaacnnnnnnnnctagcagtaccaaaacaacctcccacccaatcgtaacaaacaaagaataat |
274 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
15761720 |
agaactacaaaaacgcagcaaac-aaaaaaactagcagtaccaaaacaacctcccacccaaccgtaacaaacaaagcataat |
15761800 |
T |
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