View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11430_high_13 (Length: 311)
Name: NF11430_high_13
Description: NF11430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11430_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 13160507 - 13160782
Alignment:
| Q |
20 |
cttggctagcccaatatgttctacctgccacccaaaatatatatcaagcgataagagctcaaggtcttcatgatcaaatcaaggtttcaaccgctattga |
119 |
Q |
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| T |
13160507 |
cttggctagcccaatatgttctacctgccacccaaaatatatatcaagcgataagagctcaaggtcttcatgatcaaatcaaggtttcaaccgctattga |
13160606 |
T |
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| Q |
120 |
catgacccttattggaaattcattccctccatctaaaggttcttttagaaatgatgttaggtcatacctagatcctttcattggatacttggtatatgca |
219 |
Q |
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| T |
13160607 |
catgacccttattggaaattcattccctccatctaaaggttcttttagaaatgatgttaggtcatacctagatcctttcattggatacttggtatatgca |
13160706 |
T |
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| Q |
220 |
ggtgcacctttacttgtcaatgtttacccttattttagccatgttggtaacccgcgcgatatatctcttccttatg |
295 |
Q |
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| T |
13160707 |
ggtgcacctttacttgtcaatgtttacccttattttagccatgttggtaacccgcgcgatatatctcttccttatg |
13160782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 258
Target Start/End: Complemental strand, 13152700 - 13152493
Alignment:
| Q |
51 |
ccaaaatatatatcaagcgataagagctcaaggtcttcatgatcaaatcaaggtttcaaccgctattgacatgacccttattggaaattcattccctcca |
150 |
Q |
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| T |
13152700 |
ccaaaacatatatcaagcaataagagcgaaaaatctgcacgatcaaatcaaggtttcaacggctattgacatgaccatgataggaacttcgtacccgccg |
13152601 |
T |
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| Q |
151 |
tctaaaggttcttttagaaatgatgttaggtcatacctagatcctttcattggatacttggtatatgcaggtgcacctttacttgtcaatgtttaccctt |
250 |
Q |
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| T |
13152600 |
tctaaaggttcatttagaagcgatgtgaggtcatatttggatccaattataggctacttagtatatgcaaatgcacctttatttgcaaatatttactctt |
13152501 |
T |
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| Q |
251 |
attttagc |
258 |
Q |
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|||||||| |
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| T |
13152500 |
attttagc |
13152493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 258
Target Start/End: Complemental strand, 13145936 - 13145729
Alignment:
| Q |
51 |
ccaaaatatatatcaagcgataagagctcaaggtcttcatgatcaaatcaaggtttcaaccgctattgacatgacccttattggaaattcattccctcca |
150 |
Q |
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|||||| ||||| ||||| |||||||| || | |||| |||||||||||||||||||| ||||||||||||||| | || |||| ||| | ||| || |
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| T |
13145936 |
ccaaaacatataccaagcaataagagcgaaaaattttcaagatcaaatcaaggtttcaacggctattgacatgaccatgataggaacttcgtacccgccg |
13145837 |
T |
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| Q |
151 |
tctaaaggttcttttagaaatgatgttaggtcatacctagatcctttcattggatacttggtatatgcaggtgcacctttacttgtcaatgtttaccctt |
250 |
Q |
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||||||||||| ||||||| ||||| |||||||| | ||||| | || || ||||| ||||||||| |||||||||| ||| ||| ||||| ||| |
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| T |
13145836 |
tctaaaggttcatttagaagcgatgtgaggtcatatttggatccaattataggctacttagtatatgcaaatgcacctttatttgcaaatatttactctt |
13145737 |
T |
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| Q |
251 |
attttagc |
258 |
Q |
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|||||||| |
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| T |
13145736 |
attttagc |
13145729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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