View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11430_high_18 (Length: 261)
Name: NF11430_high_18
Description: NF11430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11430_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 245
Target Start/End: Complemental strand, 7057896 - 7057681
Alignment:
| Q |
30 |
cacatcaattgccataaaaaatcaactagtcttaagggcatccagaaagctacaacaaaaacgaatttgactgctcgaacatggacgatttactttagag |
129 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
7057896 |
cacatcaattgccataaaaaatcaacaagtcttaagggcatccagaaagctacaacaaaaacgaatttgactgctcgaacgtggacaatttactttagag |
7057797 |
T |
|
| Q |
130 |
ggtaaaacaagtaatctcaatagcgataataccaacacatgcataataaatcatgaatgtgttcatagttatcaaatcgagaatcaatttgtgaatcgaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7057796 |
ggtaaaacaagtaatctcaatagcgatattaccaacacatgcataataaatcatgaatgtgttcatagttatcaaatcgagaatcaatttgtgaatcgaa |
7057697 |
T |
|
| Q |
230 |
aaatctactttaaaat |
245 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7057696 |
aaatctactttaaaat |
7057681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 7041879 - 7041681
Alignment:
| Q |
30 |
cacatcaattgccataaaaaatcaactagtcttaagggcatccagaaagctacaacaaaaacgaatttgactgctcgaacatggacgatttactttagag |
129 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| || ||| ||||| ||||||| ||||| |
|
|
| T |
7041879 |
cacatcaattgccataaataatcagctagtcttaagggcatccagaaagctacaacgaaaacgaatttgactacttgaaagtggacaatttactctagag |
7041780 |
T |
|
| Q |
130 |
ggtaaaacaagtaatctcaatagcgataataccaacacatgcataataaatcatgaatgtgttcatagttatcaaatcgagaatcaatttgtgaatcgaa |
229 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7041779 |
ggtaaaacaagtaacctcaactgcgat-----------atgtataataaatcatgaatgtattcatagttatcaaatcgagaatcaaacagtgaatcgac |
7041691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 7048979 - 7048827
Alignment:
| Q |
30 |
cacatcaattgccataaaaaatcaactagtcttaagggcatccagaaagctacaacaaaaacgaatttgactgctcgaacatggacgatttactttagag |
129 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||||||| |||||||| |||| ||||||||||||| |
|
|
| T |
7048979 |
cacatcaattgccataaaaaatcaattagccttaagtgcatccagaaagctataacaaaaacgaatttgattgctcgaatgcggacaatttactttagag |
7048880 |
T |
|
| Q |
130 |
ggtaaaacaagtaatctcaatagcgataataccaacacatgcataataaatca |
182 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| ||||||| ||||| |||| |
|
|
| T |
7048879 |
ggtaaaacaagtaatctcaagagcgatgttaccagcacatgcgtaatatatca |
7048827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 7028887 - 7028768
Alignment:
| Q |
30 |
cacatcaattgccataaaaaatcaactagtcttaagggcatccagaaagctacaacaaaaacgaatttgactgctcgaacatggacgatttactttagag |
129 |
Q |
| |
|
||||||||||||||| |||||||| |||||| ||| |||||||||||||| | || ||||| |||||| ||| | | || ||||| ||| ||||||||| |
|
|
| T |
7028887 |
cacatcaattgccattaaaaatcagctagtcataatggcatccagaaagcaataagaaaaatgaatttcacttcgcaaaactggacaattcactttagag |
7028788 |
T |
|
| Q |
130 |
ggtaaaacaagtaatctcaa |
149 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7028787 |
tgtaaaacaagtaatctcaa |
7028768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University