View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11430_high_3 (Length: 553)

Name: NF11430_high_3
Description: NF11430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11430_high_3
NF11430_high_3
[»] chr7 (4 HSPs)
chr7 (33-538)||(42272725-42273233)
chr7 (1-34)||(8163695-8163728)
chr7 (1-34)||(40337118-40337151)
chr7 (1-34)||(41326045-41326078)
[»] chr2 (12 HSPs)
chr2 (1-36)||(15070442-15070477)
chr2 (1-34)||(5958970-5959003)
chr2 (1-34)||(6974569-6974602)
chr2 (1-34)||(21423369-21423402)
chr2 (1-34)||(24475984-24476017)
chr2 (1-34)||(30393644-30393677)
chr2 (1-34)||(37060131-37060164)
chr2 (1-34)||(37140186-37140219)
chr2 (366-405)||(2758502-2758541)
chr2 (1-32)||(4382213-4382244)
chr2 (1-34)||(10217407-10217440)
chr2 (1-34)||(27004453-27004486)
[»] scaffold0532 (1 HSPs)
scaffold0532 (1-34)||(11323-11356)
[»] scaffold0306 (1 HSPs)
scaffold0306 (1-34)||(13108-13141)
[»] scaffold0152 (1 HSPs)
scaffold0152 (1-34)||(22186-22219)
[»] chr8 (14 HSPs)
chr8 (1-34)||(4414230-4414263)
chr8 (1-34)||(4623902-4623935)
chr8 (1-34)||(22798545-22798578)
chr8 (1-34)||(23275579-23275612)
chr8 (1-34)||(23403602-23403635)
chr8 (1-34)||(30204700-30204733)
chr8 (1-31)||(4234185-4234215)
chr8 (1-34)||(3001429-3001462)
chr8 (1-34)||(14842312-14842345)
chr8 (1-34)||(16655982-16656015)
chr8 (1-34)||(21567711-21567744)
chr8 (310-355)||(30292064-30292109)
chr8 (1-34)||(37630006-37630039)
chr8 (1-34)||(45310067-45310100)
[»] chr6 (7 HSPs)
chr6 (1-34)||(1067804-1067837)
chr6 (1-34)||(2814942-2814975)
chr6 (1-34)||(24640404-24640437)
chr6 (1-34)||(26394041-26394074)
chr6 (1-31)||(444528-444558)
chr6 (1-34)||(6200214-6200247)
chr6 (1-34)||(12324176-12324209)
[»] chr5 (14 HSPs)
chr5 (1-34)||(2068967-2069000)
chr5 (1-34)||(3711186-3711219)
chr5 (1-34)||(3729385-3729418)
chr5 (1-34)||(9793687-9793720)
chr5 (1-34)||(9793784-9793817)
chr5 (1-34)||(21020687-21020720)
chr5 (1-34)||(21583853-21583886)
chr5 (1-34)||(39508368-39508401)
chr5 (1-34)||(41929345-41929378)
chr5 (1-34)||(8159122-8159155)
chr5 (1-34)||(9913806-9913839)
chr5 (1-34)||(25081771-25081804)
chr5 (1-34)||(25139740-25139773)
chr5 (1-34)||(34766936-34766969)
[»] chr4 (7 HSPs)
chr4 (1-34)||(12701042-12701075)
chr4 (1-34)||(21555384-21555417)
chr4 (1-34)||(35929711-35929744)
chr4 (1-34)||(53584618-53584651)
chr4 (1-34)||(56100190-56100223)
chr4 (1-34)||(19598371-19598404)
chr4 (1-34)||(41842792-41842825)
[»] chr3 (9 HSPs)
chr3 (1-34)||(14201721-14201754)
chr3 (1-34)||(36404274-36404307)
chr3 (1-34)||(37115939-37115972)
chr3 (1-34)||(39391961-39391994)
chr3 (1-34)||(45602988-45603021)
chr3 (211-258)||(53075737-53075784)
chr3 (1-31)||(35534489-35534519)
chr3 (310-355)||(35583880-35583925)
chr3 (1-34)||(52742356-52742389)
[»] chr1 (11 HSPs)
chr1 (1-34)||(571651-571684)
chr1 (1-34)||(6750362-6750395)
chr1 (1-34)||(39001951-39001984)
chr1 (2-34)||(9224877-9224909)
chr1 (366-405)||(31153933-31153972)
chr1 (1-34)||(794917-794950)
chr1 (1-34)||(3695410-3695443)
chr1 (1-30)||(11121865-11121894)
chr1 (1-34)||(26653992-26654025)
chr1 (1-34)||(41998931-41998964)
chr1 (370-406)||(38003632-38003668)
[»] scaffold1248 (1 HSPs)
scaffold1248 (1-34)||(972-1005)
[»] scaffold0952 (1 HSPs)
scaffold0952 (1-34)||(1308-1341)
[»] scaffold0140 (1 HSPs)
scaffold0140 (1-34)||(21480-21513)


Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 33 - 538
Target Start/End: Original strand, 42272725 - 42273233
Alignment:
Q  33 aattcttcaggctcatagacatcaattagttaaaaatacatatccaaattattggttacgatcttataataaattacgtatccaaattattacggtgacg 132  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  42272725 aatttttcaggctcatagacatcaattagttaaaaatacatatccaaattattggttatgatcttataataaattacgtatccaaattattacggtgacc 42272824  T
Q  133 ggtgacctaatttgaaagatggggatcgacaacataccagagattatttgattaaaaaaggtttctgaaaatcatgagggggtgaactcatatggacagg 232  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42272825 ggtgacctaatttgaaagatggggatcgacaaaataccagagattatttgattaaaaaaggtttctgaaaaccatgagggggtgaactcatatggacagg 42272924  T
Q  233 gaaatgttgaaagtgacggtgaaaaaatatctaaataattaaatgacaaaagggtaatattggannnnnnngataaattgtaggggtgaagatacgaatg 332  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||       |||||||||||||||||||| ||||||||    
T  42272925 gaaatgttgaaagtgagggtgaaaaaatgtctaaataattaaatgacaaaaggttaatattggatttttttgataaattgtaggggtgaaggtacgaatg 42273024  T
Q  333 taggggtatagggtaaaacttccttaagggagggtgttatttaagaagactttaagggaggtgaatgtaatttgtcttaaaactaatgacaagcgttcta 432  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42273025 taggggtatagggtaaaacttccttaagggatggtgttatttaagaagactttaagggaggtgaatgtaagttgtcttaaaactaatgacaagcgttcta 42273124  T
Q  433 tgtaaaatcttgcaattgatttaacttggattcaa---aggaagaacaaaaacgtggtgaattgagctcctgtataatatcaaagaaaatgaaatttaga 529  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42273125 tgtaaaatcttgcaattgatttaacttggattcaaattaggaagaacaaaaacgtggtgaattgagctcctgtataatatcaaagaaaatgaaatttaga 42273224  T
Q  530 gaagtgtgt 538  Q
    ||| |||||    
T  42273225 gaattgtgt 42273233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8163695 - 8163728
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  8163695 atatttcaaaaacagaaaacaaaaactatttcaa 8163728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 40337118 - 40337151
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||| ||||||||||||||||||||||||||    
T  40337118 atatttcgaaaactgaaaacaaaaactatttcaa 40337151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 41326078 - 41326045
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    |||||||||||||| |||||||||||||||||||    
T  41326078 atatttcaaaaactcaaaacaaaaactatttcaa 41326045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 15070442 - 15070477
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaatt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  15070442 atatttcaaaaactgaaaacaaaaactatttcaatt 15070477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5959003 - 5958970
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  5959003 atatttcaaaaactgaaaacaaaaactatttcaa 5958970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6974569 - 6974602
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  6974569 atatttcaaaaactgaaaacaaaaactatttcaa 6974602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 21423402 - 21423369
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  21423402 atatttcaaaaactgaaaacaaaaactatttcaa 21423369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 24475984 - 24476017
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  24475984 atatttcaaaaactgaaaacaaaaactatttcaa 24476017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30393644 - 30393677
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  30393644 atatttcaaaaactgaaaacaaaaactatttcaa 30393677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 37060131 - 37060164
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  37060131 atatttcaaaaactgaaaacaaaaactatttcaa 37060164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 37140186 - 37140219
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  37140186 atatttcaaaaactgaaaacaaaaactatttcaa 37140219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 405
Target Start/End: Original strand, 2758502 - 2758541
Alignment:
Q  366 gtgttatttaagaagactttaagggaggtgaatgtaattt 405  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  2758502 gtgttatttaagaagaccttaagggaggtgagtgtaattt 2758541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 4382244 - 4382213
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttc 32  Q
    ||||||||||||||||||||||||||||||||    
T  4382244 atatttcaaaaactgaaaacaaaaactatttc 4382213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 10217407 - 10217440
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  10217407 atatttcaaaaactgaaaataaaaactatttcaa 10217440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 27004486 - 27004453
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    |||||||||||| |||||||||||||||||||||    
T  27004486 atatttcaaaaattgaaaacaaaaactatttcaa 27004453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 11356 - 11323
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  11356 atatttcaaaaactgaaaacaaaaactatttcaa 11323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 13108 - 13141
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  13108 atatttcaaaaactgaaaacaaaaactatttcaa 13141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 22219 - 22186
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  22219 atatttcaaaaactgaaaacaaaaactatttcaa 22186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 4414263 - 4414230
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  4414263 atatttcaaaaactgaaaacaaaaactatttcaa 4414230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4623902 - 4623935
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  4623902 atatttcaaaaactgaaaacaaaaactatttcaa 4623935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 22798578 - 22798545
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  22798578 atatttcaaaaactgaaaacaaaaactatttcaa 22798545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 23275579 - 23275612
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  23275579 atatttcaaaaactgaaaacaaaaactatttcaa 23275612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 23403635 - 23403602
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  23403635 atatttcaaaaactgaaaacaaaaactatttcaa 23403602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30204700 - 30204733
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  30204700 atatttcaaaaactgaaaacaaaaactatttcaa 30204733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 4234215 - 4234185
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactattt 31  Q
    |||||||||||||||||||||||||||||||    
T  4234215 atatttcaaaaactgaaaacaaaaactattt 4234185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3001429 - 3001462
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  3001429 atatttcaaaaactgaaaataaaaactatttcaa 3001462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 14842345 - 14842312
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  14842345 atatttcaaaaactgaaaacaaaaattatttcaa 14842312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 16656015 - 16655982
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    |||||| |||||||||||||||||||||||||||    
T  16656015 atattttaaaaactgaaaacaaaaactatttcaa 16655982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 21567744 - 21567711
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||| ||||||||||||||||||||||||||    
T  21567744 atatttctaaaactgaaaacaaaaactatttcaa 21567711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 30292109 - 30292064
Alignment:
Q  310 ttgtaggggtgaagatacgaatgtaggggtatagggtaaaacttcc 355  Q
    |||||||||||||| || | ||||||||||||||||||||| ||||    
T  30292109 ttgtaggggtgaaggtatggatgtaggggtatagggtaaaatttcc 30292064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 37630039 - 37630006
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    |||||| |||||||||||||||||||||||||||    
T  37630039 atatttaaaaaactgaaaacaaaaactatttcaa 37630006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 45310067 - 45310100
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    |||||||||||| |||||||||||||||||||||    
T  45310067 atatttcaaaaattgaaaacaaaaactatttcaa 45310100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 1067837 - 1067804
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  1067837 atatttcaaaaactgaaaacaaaaactatttcaa 1067804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2814942 - 2814975
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  2814942 atatttcaaaaactgaaaacaaaaactatttcaa 2814975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 24640404 - 24640437
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  24640404 atatttcaaaaactgaaaacaaaaactatttcaa 24640437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 26394041 - 26394074
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  26394041 atatttcaaaaactgaaaacaaaaactatttcaa 26394074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 444558 - 444528
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactattt 31  Q
    |||||||||||||||||||||||||||||||    
T  444558 atatttcaaaaactgaaaacaaaaactattt 444528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6200214 - 6200247
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  6200214 atatttcaaaaactgaaaacaaaaaatatttcaa 6200247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 12324209 - 12324176
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    |||||||||||||||||||||||||||| |||||    
T  12324209 atatttcaaaaactgaaaacaaaaactacttcaa 12324176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2069000 - 2068967
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  2069000 atatttcaaaaactgaaaacaaaaactatttcaa 2068967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 3711219 - 3711186
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  3711219 atatttcaaaaactgaaaacaaaaactatttcaa 3711186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3729385 - 3729418
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  3729385 atatttcaaaaactgaaaacaaaaactatttcaa 3729418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9793687 - 9793720
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  9793687 atatttcaaaaactgaaaacaaaaactatttcaa 9793720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9793784 - 9793817
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  9793784 atatttcaaaaactgaaaacaaaaactatttcaa 9793817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 21020720 - 21020687
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  21020720 atatttcaaaaactgaaaacaaaaactatttcaa 21020687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 21583886 - 21583853
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  21583886 atatttcaaaaactgaaaacaaaaactatttcaa 21583853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 39508368 - 39508401
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  39508368 atatttcaaaaactgaaaacaaaaactatttcaa 39508401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 41929378 - 41929345
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  41929378 atatttcaaaaactgaaaacaaaaactatttcaa 41929345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8159122 - 8159155
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    |||||||||||| |||||||||||||||||||||    
T  8159122 atatttcaaaaattgaaaacaaaaactatttcaa 8159155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9913839 - 9913806
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    |||||||||||||| |||||||||||||||||||    
T  9913839 atatttcaaaaactaaaaacaaaaactatttcaa 9913806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 25081804 - 25081771
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  25081804 atatttcaaaacctgaaaacaaaaactatttcaa 25081771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 25139773 - 25139740
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  25139773 atatttcaaaacctgaaaacaaaaactatttcaa 25139740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 34766936 - 34766969
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    |||||||||||| |||||||||||||||||||||    
T  34766936 atatttcaaaaattgaaaacaaaaactatttcaa 34766969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 12701075 - 12701042
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  12701075 atatttcaaaaactgaaaacaaaaactatttcaa 12701042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 21555417 - 21555384
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  21555417 atatttcaaaaactgaaaacaaaaactatttcaa 21555384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 35929744 - 35929711
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  35929744 atatttcaaaaactgaaaacaaaaactatttcaa 35929711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 53584618 - 53584651
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  53584618 atatttcaaaaactgaaaacaaaaactatttcaa 53584651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 56100190 - 56100223
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  56100190 atatttcaaaaactgaaaacaaaaactatttcaa 56100223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 19598404 - 19598371
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||| ||||||||||||||||||||||||||    
T  19598404 atatttcgaaaactgaaaacaaaaactatttcaa 19598371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 41842825 - 41842792
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  41842825 atatttcaaaaaccgaaaacaaaaactatttcaa 41842792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 14201754 - 14201721
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  14201754 atatttcaaaaactgaaaacaaaaactatttcaa 14201721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 36404274 - 36404307
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  36404274 atatttcaaaaactgaaaacaaaaactatttcaa 36404307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 37115939 - 37115972
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  37115939 atatttcaaaaactgaaaacaaaaactatttcaa 37115972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 39391994 - 39391961
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  39391994 atatttcaaaaactgaaaacaaaaactatttcaa 39391961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 45603021 - 45602988
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  45603021 atatttcaaaaactgaaaacaaaaactatttcaa 45602988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 53075784 - 53075737
Alignment:
Q  211 ggggtgaactcatatggacagggaaatgttgaaagtgacggtgaaaaa 258  Q
    ||||||||||||||||||   ||||||||||||||||| |||||||||    
T  53075784 ggggtgaactcatatggatttggaaatgttgaaagtgagggtgaaaaa 53075737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 35534519 - 35534489
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactattt 31  Q
    |||||||||||||||||||||||||||||||    
T  35534519 atatttcaaaaactgaaaacaaaaactattt 35534489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 35583925 - 35583880
Alignment:
Q  310 ttgtaggggtgaagatacgaatgtaggggtatagggtaaaacttcc 355  Q
    |||||||||||||| |||  |||| |||||||||||||||||||||    
T  35583925 ttgtaggggtgaaggtacatatgtcggggtatagggtaaaacttcc 35583880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 52742389 - 52742356
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  52742389 atatttcaaaaactggaaacaaaaactatttcaa 52742356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 571684 - 571651
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  571684 atatttcaaaaactgaaaacaaaaactatttcaa 571651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6750362 - 6750395
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  6750362 atatttcaaaaactgaaaacaaaaactatttcaa 6750395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 39001984 - 39001951
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  39001984 atatttcaaaaactgaaaacaaaaactatttcaa 39001951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 9224877 - 9224909
Alignment:
Q  2 tatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    |||||||||||||||||||||||||||||||||    
T  9224877 tatttcaaaaactgaaaacaaaaactatttcaa 9224909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 405
Target Start/End: Original strand, 31153933 - 31153972
Alignment:
Q  366 gtgttatttaagaagactttaagggaggtgaatgtaattt 405  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  31153933 gtgttatttaagaagaatttaggggaggtgaatgtaattt 31153972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 794950 - 794917
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  794950 atatttcaaaaactgaaaacaaaaaatatttcaa 794917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 3695443 - 3695410
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  3695443 atatttcaaaaaccgaaaacaaaaactatttcaa 3695410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 11121894 - 11121865
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatt 30  Q
    ||||||||||||||||||||||||||||||    
T  11121894 atatttcaaaaactgaaaacaaaaactatt 11121865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 26653992 - 26654025
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    |||||||||||| |||||||||||||||||||||    
T  26653992 atatttcaaaaattgaaaacaaaaactatttcaa 26654025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 41998931 - 41998964
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    |||||||||||| |||||||||||||||||||||    
T  41998931 atatttcaaaaaatgaaaacaaaaactatttcaa 41998964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 38003632 - 38003668
Alignment:
Q  370 tatttaagaagactttaagggaggtgaatgtaatttg 406  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  38003632 tatttaagaagaccttaagggaggtgagtgtaatttg 38003668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1248 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 1005 - 972
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    |||||| |||||||||||||||||||||||||||    
T  1005 atattttaaaaactgaaaacaaaaactatttcaa 972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1308 - 1341
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    |||||| |||||||||||||||||||||||||||    
T  1308 atattttaaaaactgaaaacaaaaactatttcaa 1341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 21513 - 21480
Alignment:
Q  1 atatttcaaaaactgaaaacaaaaactatttcaa 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  21513 atatttcaaaaactgaaaacaaaaactgtttcaa 21480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University