View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11430_high_6 (Length: 447)
Name: NF11430_high_6
Description: NF11430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11430_high_6 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Original strand, 53492432 - 53492868
Alignment:
| Q |
11 |
caaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatgatagtttcactacttggacgaagagcaagatgagcttccaaatcagaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53492432 |
caaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatgatagtttcactacttggacgaagagcaagatgagcttccaaatcagaa |
53492531 |
T |
|
| Q |
111 |
tgtccagactttgttacccaagcaacctagaaaacaagcaagataatcagaaaaatactaataatatcctcaagggaagcaacgaagttgcatagattac |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
53492532 |
tgtccagactttgttacccaagcaacctagaaaacaagcaagataatcagaaaaatactaataatgtcctcaagggaagcaacgaagttgcatagattac |
53492631 |
T |
|
| Q |
211 |
tataaagaaaattgttaacagaagtcattttaccacaaaaccaacatcagtaaaatgagaaacattgataaaataattaggaagcaacaaatgatttaat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53492632 |
tataaagaaaattgttaacagaagtcattttaccacaaaaccaacatcagtaaaatgagaaacattgataaaataattaggaagcaacaaatgatttaat |
53492731 |
T |
|
| Q |
311 |
aatgcaatgattttcaaatatttaggagcaaaccaaacaaacttaaaaactctcaccacttgtttaaaaccgtcattatgggccttctcctttttcaaat |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
53492732 |
aatgcaatgattttcaaatatttaggagcaaaccaaacaaacttaaaaactctcaccacttgtttaaaaccttcattatgggccttctcctttttcaaat |
53492831 |
T |
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| Q |
411 |
ggcagtctagcacaaacatagggaagtagcagttctc |
447 |
Q |
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| T |
53492832 |
ggcagtctagcacaaacatagggaagtagcagttctc |
53492868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 346
Target Start/End: Original strand, 53500352 - 53500687
Alignment:
| Q |
11 |
caaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatgatagtttcactacttggacgaagagcaagatgagcttccaaatcagaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53500352 |
caaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatgatagtttcactacttggacgaagagcaagatgagcttccaaatcagac |
53500451 |
T |
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| Q |
111 |
tgtccagactttgttacccaagcaacctagaaaacaagcaagataatcagaaaaatactaataatatcctcaagggaagcaacgaagttgcatagattac |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||||| |
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| T |
53500452 |
tgtccagactttgttacccaagcaacctagaaaacaagcaagataatcagaaaaatactaataatgtccttttgggaagcaatgaagttgtatagattat |
53500551 |
T |
|
| Q |
211 |
tataaagaaaattgttaacagaagtcattttaccacaaaaccaacatcagtaaaatgagaaacattgataaaataattaggaagcaacaaatgatttaat |
310 |
Q |
| |
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|||||||||||| |||| || ||||||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
53500552 |
tataaagaaaatccttaaaagcggtcattttaacacgaaaccatcattagtaaaatgagaaacattgataaaataattaggatccaacaaatgatttaat |
53500651 |
T |
|
| Q |
311 |
aatgcaatgattttcaaatatttaggagcaaaccaa |
346 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
53500652 |
aatgcaatgattttcaaatatttaggagcaaaccaa |
53500687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 11 - 346
Target Start/End: Original strand, 16071547 - 16071880
Alignment:
| Q |
11 |
caaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatgatagtttcactacttggacgaagagcaagatgagcttccaaatcagaa |
110 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||||||||||||| || |||| |||||||||| |||||| ||||||||||| |||||||||||| |
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| T |
16071547 |
caaaggcaagtcgcggtgtccccttatccacttagagtaatagggatatattatagcttcactacttagacgaacagcaagatgagtttccaaatcagac |
16071646 |
T |
|
| Q |
111 |
tgtccagactttgttacccaagcaacctagaaaacaagca-agataatcagaaaaatactaataatatcctcaagggaagcaacgaagttgcatagatta |
209 |
Q |
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||||||||||||||||||||||||||||||||||| | || | |||||||||||||||| |||||||||||||| |||||| ||| || ||||| || |
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| T |
16071647 |
tgtccagactttgttacccaagcaacctagaaaacgaacatatataatcagaaaaatacaaataatatcctcaaaaaaagcaatgaatttatatagacta |
16071746 |
T |
|
| Q |
210 |
ctataaagaaaattgttaacagaagtcattttaccacaaaaccaacatcagtaaaatgagaaacattgataaaataattaggaagcaacaaatgatttaa |
309 |
Q |
| |
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|||||||||||| ||||| || |||||||| | ||||||| || || | |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16071747 |
ttataaagaaaatcgttaaaagcagtcatttcaacacaaaa-catca--acgaaaatgagaaacattgataaaataattaggaacaaacaaatgatttaa |
16071843 |
T |
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| Q |
310 |
taatgcaatgattttcaaatatttaggagcaaaccaa |
346 |
Q |
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||||||||||||||||||||||||| ||| ||||||| |
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| T |
16071844 |
taatgcaatgattttcaaatatttaagagaaaaccaa |
16071880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 341 - 447
Target Start/End: Original strand, 16071916 - 16072022
Alignment:
| Q |
341 |
aaccaaacaaacttaaaaactctcaccacttgtttaaaaccgtcattatgggccttctcctttttcaaatggcagtctagcacaaacatagggaagtagc |
440 |
Q |
| |
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|||| |||||||||||||||||||||| || | ||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
16071916 |
aacccaacaaacttaaaaactctcacctctggcttaaaaccgtcataatgggccttctcctttttcaaatgacattctagcacaaacatagggaagtagc |
16072015 |
T |
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| Q |
441 |
agttctc |
447 |
Q |
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|| |||| |
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| T |
16072016 |
agctctc |
16072022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 341 - 447
Target Start/End: Original strand, 53500713 - 53500819
Alignment:
| Q |
341 |
aaccaaacaaacttaaaaactctcaccacttgtttaaaaccgtcattatgggccttctcctttttcaaatggcagtctagcacaaacatagggaagtagc |
440 |
Q |
| |
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|||| |||| ||||||||||||||||| ||||||||||||| ||||| |||| |||||||||||||| |||||||||||||||| |||||||||| |
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| T |
53500713 |
aacctaacatacttaaaaactctcacctcttgtttaaaaccactgttatgagcctcttcctttttcaaatgagagtctagcacaaacatggggaagtagc |
53500812 |
T |
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| Q |
441 |
agttctc |
447 |
Q |
| |
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||||||| |
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| T |
53500813 |
agttctc |
53500819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 45353643 - 45353516
Alignment:
| Q |
11 |
caaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatgatagtttcactacttggacgaagagcaagatgagcttccaaatcagaa |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| || |||||||| | |||||||||| ||||||||| ||||| | || || |||||||| |
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| T |
45353643 |
caaaggcaagtcacgatgtccccttatccacttagagtagtaaggatacataacagtttcactagttggacgaatagcaataggaatctctaaatcagat |
45353544 |
T |
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| Q |
111 |
tgtccagactttgttacccaagcaacct |
138 |
Q |
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| T |
45353543 |
tctccagatttggtcacccaagcaacct |
45353516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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