View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11430_high_7 (Length: 421)
Name: NF11430_high_7
Description: NF11430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11430_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 37930021 - 37929628
Alignment:
| Q |
20 |
ccatctccctaacttcatatatttcatcagcattggcattctcaagcacttgcttgtctctactagtcacaatgattctactcccaaggccaaa--ggta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
37930021 |
ccatctccctaacttcatatatttcatcggcattggcattctcaagcacttgcttgtctctactactcacaatgattctactcccaaggccaaaaaggta |
37929922 |
T |
|
| Q |
118 |
ctacgaccaattaaaccttcaagttgatctgaatcgttcacgtcatcaagaacaaggagaacctctcctcgttgaagccttggaatgtatgaaaacttga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37929921 |
ctacgaccaattaaaccttcaagttgatctgaatcgttcacgtcatcaagaacaaggagaacctttcctcgttgaagccttggaatgtatgaaaacttga |
37929822 |
T |
|
| Q |
218 |
atccagaggatgtaatgtcttcctctagaagttgtgataagtattttctttgtacatggcatagtcaagttctttctatttcttgttgagcatttagaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
37929821 |
atccagaggatgtaatgtcttcctctagaagttgtgataagtattttctttgtacatggcgtagtccagctctttctatttcttgttgagcatttagaat |
37929722 |
T |
|
| Q |
318 |
gatgcttttggaactgaactgagttgagaatttatgatagattgcattggcaattgttgttttgcctatccctcccatgccccgtattcctatg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37929721 |
gatgcttttggaactgaactgagttgagaattgatgatagattgcattggcaattgttgttttgcctatccctcccatgccccgtattcctatg |
37929628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 31 - 411
Target Start/End: Original strand, 37957573 - 37957959
Alignment:
| Q |
31 |
acttcatatatttcatcagcattggcattctcaagcacttgcttgtctctactagtcacaatgattctactcccaaggccaaaggtactacga------c |
124 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||| ||||| || | |
|
|
| T |
37957573 |
actttatatatttcatcagcattgccattcttgagcacttgcttgtctctgttagtcacaatggttctactcccttggccaaagttactatgatgtgttc |
37957672 |
T |
|
| Q |
125 |
caattaaaccttcaagttgatctgaatcgttcacgtcatcaagaacaaggagaacctctcctcgttgaagccttggaatgtatgaaaacttgaatccaga |
224 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||| || | |||| ||||||||| ||||||| ||| || ||| |
|
|
| T |
37957673 |
caattaaatcttcaagttgatcagaatctttcacatcatcaagaacaaggagaatctttgtccgtttgagccttggatcaaatgaaaaattggatttaga |
37957772 |
T |
|
| Q |
225 |
ggatgtaatgtcttcctctagaagttgtgataagtattttctttgtacatggcatagtcaagttctttctatttcttgttgagcatttagaatgatgctt |
324 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||| |||||||| ||||| || |||||| |||||||||| ||||||||| ||||||| |
|
|
| T |
37957773 |
ggatgtaatgtcttcatctagaagttctgataagtattttcttcgtacatggtctagtccagctctttcgatttcttgtttcacatttagaacgatgctt |
37957872 |
T |
|
| Q |
325 |
ttggaactgaactgagttgagaatttatgatagattgcattggcaattgttgttttgcctatccctcccatgccccgtattcctatg |
411 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
37957873 |
ctggaactgaactgagttgcgagtttatgatagattgcactggcaattgttgttttgcctgtccctcccatgccccatattcctatg |
37957959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 409
Target Start/End: Original strand, 44644653 - 44644770
Alignment:
| Q |
292 |
tctatttcttgttgagcatttagaatgatgcttttggaactgaactgagttgagaatttatgatagattgcattggcaattgttgttttgcctatccctc |
391 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| || ||||||| || |||| ||||| |||| |||||| | |||||||||||||| ||||| |||| |
|
|
| T |
44644653 |
tctatttcttgttgaacatttaggatgatgctgttaaaactgaattgggttgccaatttgcgatatattgcactagcaattgttgttttccctattcctc |
44644752 |
T |
|
| Q |
392 |
ccatgccccgtattccta |
409 |
Q |
| |
|
|||| |||| ||||||| |
|
|
| T |
44644753 |
ccataccccagattccta |
44644770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 44644379 - 44644538
Alignment:
| Q |
21 |
catctccctaacttcatatatttcatcagcattggcattctcaagcacttgcttgtctctactagtcacaatgattctactcccaaggccaaaggtacta |
120 |
Q |
| |
|
||||||| | |||||||||||| ||||||| ||| |||||| || || ||| ||||||| |||||||||||||||||||| || | |||| ||||| |
|
|
| T |
44644379 |
catctccttgacttcatatattccatcagctttgacattcttcagtacctgcatgtctctgctagtcacaatgattctactacctggtgcaaacttacta |
44644478 |
T |
|
| Q |
121 |
cg---accaattaaaccttcaagttgatctgaatcgttcacgtcatcaagaacaaggaga |
177 |
Q |
| |
|
| ||||||||| || ||||||||| |||| ||| || |||||||||||||||||| |
|
|
| T |
44644479 |
agctttccaattaaatctctaagttgatccgaattgttaacatcatcaagaacaaggaga |
44644538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 19869295 - 19869225
Alignment:
| Q |
31 |
acttcatatatttcatcagcattggcattctcaagcacttgcttgtctctactagtcacaatgattctact |
101 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
19869295 |
acttcatatatttcatcagcatctatattcttaagtacttgcatgtctctactagtcacaatgattctact |
19869225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 407
Target Start/End: Original strand, 34727847 - 34727887
Alignment:
| Q |
367 |
gcaattgttgttttgcctatccctcccatgccccgtattcc |
407 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
34727847 |
gcaattgttgttttgccgatccctcccatgccccatattcc |
34727887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 407
Target Start/End: Original strand, 34731005 - 34731045
Alignment:
| Q |
367 |
gcaattgttgttttgcctatccctcccatgccccgtattcc |
407 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
34731005 |
gcaattgttgttttgccgatccctcccatgccccatattcc |
34731045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 400
Target Start/End: Original strand, 34735604 - 34735637
Alignment:
| Q |
367 |
gcaattgttgttttgcctatccctcccatgcccc |
400 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
34735604 |
gcaattgttgttttgccgatccctcccatgcccc |
34735637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 18928879 - 18928839
Alignment:
| Q |
367 |
gcaattgttgttttgcctatccctcccatgccccgtattcc |
407 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
18928879 |
gcaattgttgttttgccgatccctcccataccccatattcc |
18928839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 25721600 - 25721507
Alignment:
| Q |
21 |
catctccctaacttcatatatttcatcagcattggcattctcaagcacttgcttgtctctactagtcacaatgattctactcccaaggccaaag |
114 |
Q |
| |
|
||||||| | ||||| ||||||||||| | | ||||||||| |||||| || |||||||||||||||| |||||||||||| || |||||||| |
|
|
| T |
25721600 |
catctccttgacttcgtatatttcatctgaaatggcattcttaagcacatgtttgtctctactagtcataatgattctactaccctggccaaag |
25721507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University