View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11430_low_1 (Length: 581)
Name: NF11430_low_1
Description: NF11430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11430_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Complemental strand, 41079008 - 41078597
Alignment:
| Q |
19 |
cttgtaactagtaaacttttctacatactcggtggttttattctctcaaatcatggaatttctttgctgccatatgctccataaaaacattataaaattg |
118 |
Q |
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| T |
41079008 |
cttgtaactagtaaacttttctacatactcggtggttttattctctcaaatcatggaatttctttgctgccatatgctccataaaaacattataaaattg |
41078909 |
T |
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| Q |
119 |
atcacatttcctatgcactgaaaacaatttgttgtaccaaatgtgccatatgcatggcattttgtacgtcaacaagttttgctattaatttgagaaatnn |
218 |
Q |
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| T |
41078908 |
atcacatttcctatgcactgaaaacaatttgttgtaccaaatgtgccatatgcatggcattttgtcggtcaacaagttttgctattaatttgagaaataa |
41078809 |
T |
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| Q |
219 |
nnnnnnnnntactactaggtgccaagaactttcaggacataacgcacaaaaaggatcacattgaataactttttattgtgttccccatcatgacataggc |
318 |
Q |
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| T |
41078808 |
aaaaaa----aatactaggtgccaagaactttcaggacataacgcacaaaaaggatcacattgaatacctttttattgtgttccccatcatgacataggc |
41078713 |
T |
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| Q |
319 |
accacatgaattgtttatttttagttttcttagtatgtcgttcattatgcattttttagttaaattaaactagcagtttttgtgttaaaaataaattgtc |
418 |
Q |
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| T |
41078712 |
accacatgaattgtttatttttagttttcttagtatgtcgttcattatgcattttttagttaaattaaa-tagcagtttttgtgttaaaaataaattgtc |
41078614 |
T |
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| Q |
419 |
attttatttgaactgcc |
435 |
Q |
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| T |
41078613 |
attttatttgaactgcc |
41078597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 468 - 575
Target Start/End: Complemental strand, 41078564 - 41078457
Alignment:
| Q |
468 |
tggccaaatttactcgcctcactaagaactgtaactctaattttaggtactcacatactcaccttctcctctctcagtcacactgccaccaccaccaccc |
567 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41078564 |
tggccaaatttactcgccccactaagaactgtaactctaattttaggtactcacatactcaccttctcctctctcagtcacactgccaccaccaccaccc |
41078465 |
T |
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| Q |
568 |
tttgcttc |
575 |
Q |
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| T |
41078464 |
tttgcttc |
41078457 |
T |
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