View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11430_low_11 (Length: 365)
Name: NF11430_low_11
Description: NF11430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11430_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 123 - 353
Target Start/End: Complemental strand, 33629295 - 33629065
Alignment:
| Q |
123 |
tcgcatcttaaatttcgtgaaatgagtgaatacattctttcaatcaaataaatccacatatacctaatgagttcatcaatgaaagttaaaaagtagcaat |
222 |
Q |
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| T |
33629295 |
tcgcatcttaaatttcgtgaaatgagtgaatacatcctttcaatcaaataaatccacatatacctaatgagttcatctatgaaagttaaaaagtagcaat |
33629196 |
T |
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| Q |
223 |
tacctccaagtgactttacttcaaatgacccacatacatttgagcgtacaatttccaattttctctttgacttcatatgcaagtcattgttgaataattg |
322 |
Q |
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| T |
33629195 |
tacctccaagtgactttacttcaaatggcccacatacatttgagcgtacaatttccaattttctctttgacttcatatgcaagtcattgttgaataattg |
33629096 |
T |
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| Q |
323 |
tcttgtttgtttagctacacatcactcttca |
353 |
Q |
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| T |
33629095 |
tcttgtttgtttagctacacatcactcttca |
33629065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 33629445 - 33629325
Alignment:
| Q |
1 |
aacaataccattatgttttggtgtatcaggagttataacttcatgctcaataccnnnnnnnctcgcaaattttttcaaattcaatggaaatgtaatcaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
33629445 |
aacaataccattatgttttggtgtatcaggagttataacttcatgctcaatacctttttttctcgcaaaatttttcaaattcaatggaaatgtaatcac- |
33629347 |
T |
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| Q |
101 |
tgatccacatcggttctcaatttc |
124 |
Q |
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| T |
33629346 |
--atccacatcggttctcaatttc |
33629325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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