View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11430_low_12 (Length: 358)

Name: NF11430_low_12
Description: NF11430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11430_low_12
NF11430_low_12
[»] chr1 (5 HSPs)
chr1 (1-202)||(52910966-52911166)
chr1 (212-340)||(52911365-52911493)
chr1 (76-137)||(32398772-32398831)
chr1 (79-129)||(40543096-40543146)
chr1 (76-132)||(32857995-32858051)
[»] chr7 (3 HSPs)
chr7 (296-340)||(12229549-12229593)
chr7 (234-282)||(12229503-12229551)
chr7 (86-136)||(33084904-33084953)
[»] chr2 (2 HSPs)
chr2 (76-137)||(1652586-1652645)
chr2 (75-137)||(28859551-28859613)
[»] chr3 (1 HSPs)
chr3 (98-137)||(50574742-50574781)
[»] chr8 (2 HSPs)
chr8 (76-137)||(16622593-16622652)
chr8 (87-135)||(21658862-21658910)
[»] chr5 (2 HSPs)
chr5 (99-137)||(6296925-6296963)
chr5 (99-137)||(39107815-39107853)
[»] scaffold0160 (1 HSPs)
scaffold0160 (76-137)||(29546-29606)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 52910966 - 52911166
Alignment:
Q  1 aattctaccttttttattagtattatatgcaacatacttcttaatatacttggggggtaattggtttgagcttgcgttcaaactcggacgaaggaggaaa 100  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||     ||   ||||||||||||||||||||| |||||||||||    
T  52910966 aattctaccttttttattagtattatttgcaacagacttcttaatatacttggggggggggggggg-gagcttgcgttcaaactcggaggaaggaggaaa 52911064  T
Q  101 aaactagtctaacaactaattacgaacatttgccattgacaaacttcttaatatactttctcctattggttgaaactcaaataggtctcactaaattttg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  52911065 aaactagtctaacaactaattacgaacatttgccattgacaaacttcttaatatactttctcctattgtttgaaactcaaataggtctcactaaattttg 52911164  T
Q  201 tg 202  Q
    ||    
T  52911165 tg 52911166  T

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Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 52911365 - 52911493
Alignment:
Q  212 aattcaagtcctctgtatacggggagaattatgatgaggaaagtgagcttggcactgaaaagccaactgaagcctccaagaaacgaaaagcgcatgctga 311  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  52911365 aattcaagtcctatgtatacggggagaattatgatgaggaaagtgagcttggcactggaaagccaactgaagcctccaagaaacgaaaagcgcatgctga 52911464  T
Q  312 gtttgctatgaaagagtgtgagaactatg 340  Q
    |||||||||||||||||||||||||||||    
T  52911465 gtttgctatgaaagagtgtgagaactatg 52911493  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 32398772 - 32398831
Alignment:
Q  76 gttcaaactcggacgaaggaggaaaaaactagtctaacaactaattacgaacatttgccatt 137  Q
    |||||||||| ||||||||||  |||||||| |||||||||||||||| || ||||||||||    
T  32398772 gttcaaactcagacgaaggag--aaaaactaatctaacaactaattactaatatttgccatt 32398831  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 40543146 - 40543096
Alignment:
Q  79 caaactcggacgaaggaggaaaaaactagtctaacaactaattacgaacat 129  Q
    ||||| ||||| |||||| ||||||||| |||||||||||||||| |||||    
T  40543146 caaacccggacaaaggagaaaaaaactattctaacaactaattactaacat 40543096  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 32857995 - 32858051
Alignment:
Q  76 gttcaaactcggacgaaggaggaaaaaactagtctaacaactaattacgaacatttg 132  Q
    ||||||||||| ||||||||| |||||| || | |||| ||||||||| ||||||||    
T  32857995 gttcaaactcgaacgaaggagaaaaaaattaatataactactaattactaacatttg 32858051  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 12229549 - 12229593
Alignment:
Q  296 gaaaagcgcatgctgagtttgctatgaaagagtgtgagaactatg 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12229549 gaaaagcgcatgctgagtttgctatgaaagagtgtgagaactatg 12229593  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 12229503 - 12229551
Alignment:
Q  234 ggagaattatgatgaggaaagtgagcttggcactgaaaagccaactgaa 282  Q
    ||||||||||||  ||||||||||||||||||||| |||||||||||||    
T  12229503 ggagaattatgacaaggaaagtgagcttggcactggaaagccaactgaa 12229551  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 33084953 - 33084904
Alignment:
Q  86 ggacgaaggaggaaaaaactagtctaacaactaattacgaacatttgccat 136  Q
    ||||||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  33084953 ggacgaaggag-aaaaaactaatctaacaactaattactaacatttgccat 33084904  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 1652586 - 1652645
Alignment:
Q  76 gttcaaactcggacgaaggaggaaaaaactagtctaacaactaattacgaacatttgccatt 137  Q
    |||||||| |||| |||||||  |||||||| |||||||||||||||| |||||||||||||    
T  1652586 gttcaaacccggatgaaggag--aaaaactaatctaacaactaattaccaacatttgccatt 1652645  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 28859551 - 28859613
Alignment:
Q  75 cgttcaaactcggacgaaggaggaaaaaactagtctaacaactaattacgaacatttgccatt 137  Q
    ||||||||| |  ||||||| |||||||| ||||||||||||||||||  |||||||| ||||    
T  28859551 cgttcaaaccctaacgaaggtggaaaaaattagtctaacaactaattataaacatttgtcatt 28859613  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 50574781 - 50574742
Alignment:
Q  98 aaaaaactagtctaacaactaattacgaacatttgccatt 137  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  50574781 aaaaaactaatctaacaactaattactaacatttgccatt 50574742  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 16622652 - 16622593
Alignment:
Q  76 gttcaaactcggacgaaggaggaaaaaactagtctaacaactaattacgaacatttgccatt 137  Q
    |||||||||||||  ||||||  |||||||| |||||||||||||||| |||||||| ||||    
T  16622652 gttcaaactcggataaaggag--aaaaactaatctaacaactaattactaacatttgtcatt 16622593  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 21658910 - 21658862
Alignment:
Q  87 gacgaaggaggaaaaaactagtctaacaactaattacgaacatttgcca 135  Q
    |||||||||| ||||||||| |||||||||||| ||| | |||||||||    
T  21658910 gacgaaggagaaaaaaactaatctaacaactaagtactatcatttgcca 21658862  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 6296925 - 6296963
Alignment:
Q  99 aaaaactagtctaacaactaattacgaacatttgccatt 137  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  6296925 aaaaactaatctaacaactaattactaacatttgccatt 6296963  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 39107815 - 39107853
Alignment:
Q  99 aaaaactagtctaacaactaattacgaacatttgccatt 137  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  39107815 aaaaactattctaacaactaattactaacatttgccatt 39107853  T

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Target: scaffold0160 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 29546 - 29606
Alignment:
Q  76 gttcaaactcggacgaaggaggaaaaaactagtctaacaactaattacgaacatttgccatt 137  Q
    |||| ||| |||||||||||| |||||||||  ||||||||||||||| | |||||||||||    
T  29546 gttccaacccggacgaaggag-aaaaaactaaactaacaactaattactagcatttgccatt 29606  T

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