View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11430_low_13 (Length: 341)

Name: NF11430_low_13
Description: NF11430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11430_low_13
NF11430_low_13
[»] chr4 (7 HSPs)
chr4 (60-190)||(55203371-55203500)
chr4 (111-182)||(55205844-55205915)
chr4 (16-59)||(55203569-55203612)
chr4 (227-291)||(2924604-2924668)
chr4 (227-298)||(2924432-2924503)
chr4 (237-291)||(31485412-31485466)
chr4 (158-190)||(10032286-10032318)
[»] chr3 (2 HSPs)
chr3 (227-298)||(49340369-49340440)
chr3 (156-190)||(34374786-34374820)
[»] chr5 (1 HSPs)
chr5 (227-279)||(14209873-14209925)
[»] chr7 (2 HSPs)
chr7 (112-185)||(46513512-46513583)
chr7 (161-190)||(46164480-46164509)
[»] chr1 (3 HSPs)
chr1 (161-190)||(25491998-25492027)
chr1 (161-190)||(48990904-48990933)
chr1 (161-190)||(52433054-52433083)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 60 - 190
Target Start/End: Complemental strand, 55203500 - 55203371
Alignment:
Q  60 ggcggcgccggcaggaggcatggcgatgagtgagatacgcttgagaaagaggaagcgcgtgtttctcctctattttgttttttaattnnnnnnngctgat 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  55203500 ggcggcgccggcaggaggcatggcgatgagtgagatacgcttgagaaagaggaagcgcgtgtttctcctctattttgttttttaatt-aaaaaagctgat 55203402  T
Q  160 gttttgtttatttttaatctgaaccattgaa 190  Q
    |||||||||||||||||||||||||||||||    
T  55203401 gttttgtttatttttaatctgaaccattgaa 55203371  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 55205844 - 55205915
Alignment:
Q  111 gaagcgcgtgtttctcctctattttgttttttaattnnnnnnngctgatgttttgtttatttttaatctgaa 182  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  55205844 gaagcgcgtgtttctcctctattttgttttttaattaaaaaaaactgatgttttgtttatttttaatctgaa 55205915  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 55203612 - 55203569
Alignment:
Q  16 agagaggagaaacaatggtggtttggtacgtgagagcggcagtg 59  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  55203612 agagaagagaaacaatggtggtttggtacgtgagagcggcagtg 55203569  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 2924668 - 2924604
Alignment:
Q  227 ctccatttagcttaactccatttactcctgtttaatagatagatgactgccatctagaaaaaata 291  Q
    ||||||||  ||||||||||||||||||| ||||||| | ||||||||||||| | |||||||||    
T  2924668 ctccattttacttaactccatttactcctttttaatacacagatgactgccatgtggaaaaaata 2924604  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 298
Target Start/End: Original strand, 2924432 - 2924503
Alignment:
Q  227 ctccatttagcttaactccatttactcctgtttaatagatagatgactgccatctagaaaaaatatatccaa 298  Q
    |||||||| |||||||||||||||||||| ||||||| | ||||||||| ||| | ||||||| | ||||||    
T  2924432 ctccattttgcttaactccatttactcctttttaatacacagatgactgtcatgtggaaaaaacaaatccaa 2924503  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 31485412 - 31485466
Alignment:
Q  237 cttaactccatttactcctgtttaatagatagatgactgccatctagaaaaaata 291  Q
    ||||||||||||||||||| ||||||| | ||||||||| ||| | |||||||||    
T  31485412 cttaactccatttactcctttttaatacacagatgactgtcatgtggaaaaaata 31485466  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 10032286 - 10032318
Alignment:
Q  158 atgttttgtttatttttaatctgaaccattgaa 190  Q
    ||||||||||||||||||||||||| |||||||    
T  10032286 atgttttgtttatttttaatctgaatcattgaa 10032318  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 298
Target Start/End: Original strand, 49340369 - 49340440
Alignment:
Q  227 ctccatttagcttaactccatttactcctgtttaatagatagatgactgccatctagaaaaaatatatccaa 298  Q
    |||||||| |||| ||||||||||||| ||||||||| ||||||||||||||| | |||||| || ||||||    
T  49340369 ctccattttgcttgactccatttactcttgtttaatacatagatgactgccatgtggaaaaattaaatccaa 49340440  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 34374786 - 34374820
Alignment:
Q  156 tgatgttttgtttatttttaatctgaaccattgaa 190  Q
    |||||||||||||||||||||||||||||||||||    
T  34374786 tgatgttttgtttatttttaatctgaaccattgaa 34374820  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 14209925 - 14209873
Alignment:
Q  227 ctccatttagcttaactccatttactcctgtttaatagatagatgactgccat 279  Q
    |||||||| |||||||||||||||||||| ||||||| | |||||||||||||    
T  14209925 ctccattttgcttaactccatttactcctttttaatacacagatgactgccat 14209873  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 46513512 - 46513583
Alignment:
Q  112 aagcgcgtgtttctcctctattttgttttttaattnnnnnnngctgatgttttgtttatttttaatctgaacca 185  Q
    ||||||||||| |||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||    
T  46513512 aagcgcgtgtt-ctcctctatttttttttttaattaaaaaa-gctgatgttttgtttatttttaatctgaacca 46513583  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 190
Target Start/End: Complemental strand, 46164509 - 46164480
Alignment:
Q  161 ttttgtttatttttaatctgaaccattgaa 190  Q
    ||||||||||||||||||||||||||||||    
T  46164509 ttttgtttatttttaatctgaaccattgaa 46164480  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 190
Target Start/End: Original strand, 25491998 - 25492027
Alignment:
Q  161 ttttgtttatttttaatctgaaccattgaa 190  Q
    ||||||||||||||||||||||||||||||    
T  25491998 ttttgtttatttttaatctgaaccattgaa 25492027  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 190
Target Start/End: Original strand, 48990904 - 48990933
Alignment:
Q  161 ttttgtttatttttaatctgaaccattgaa 190  Q
    ||||||||||||||||||||||||||||||    
T  48990904 ttttgtttatttttaatctgaaccattgaa 48990933  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 190
Target Start/End: Complemental strand, 52433083 - 52433054
Alignment:
Q  161 ttttgtttatttttaatctgaaccattgaa 190  Q
    ||||||||||||||||||||||||||||||    
T  52433083 ttttgtttatttttaatctgaaccattgaa 52433054  T

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