View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11430_low_16 (Length: 292)
Name: NF11430_low_16
Description: NF11430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11430_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 712976 - 713240
Alignment:
| Q |
18 |
caattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatc |
117 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
712976 |
caattgaatgttgggtatggaaatgcagttgctattgctggacttagcagccaaaatcctggtgtaatcacaattgctaatgctgtatttggatctaatc |
713075 |
T |
|
| Q |
118 |
caaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgggtggacaacaactagaattg |
217 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
713076 |
caaaaatttcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggataatcttcaaaaacaattctgggtggacaacaactagaattg |
713175 |
T |
|
| Q |
218 |
caggctgtgatatgtgcttgaatcactaaatttattgttaaatttgttctttattttaccctatg |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
713176 |
caggctgtgatatgtgcttgaatcactaaatttattgttaaatttgttctttattttaccctatg |
713240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 710731 - 710512
Alignment:
| Q |
18 |
caattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
710731 |
caattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatcctggtgtaatcacaattgctaatgctgtatttggatctaatc |
710632 |
T |
|
| Q |
118 |
caaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgggtggacaacaactagaattg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
710631 |
caaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggacaatcttcaaaaacaattttgggtggacaacaactagaattg |
710532 |
T |
|
| Q |
218 |
caggctgtgatatgtgcttg |
237 |
Q |
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|||| ||||||||| |||| |
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| T |
710531 |
caggtcgtgatatgtacttg |
710512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 702462 - 702266
Alignment:
| Q |
18 |
caattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
702462 |
caattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatc |
702363 |
T |
|
| Q |
118 |
caaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgggtggacaacaactagaa |
214 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
702362 |
caaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggacaatcttcaaaaacaattctgggtggacaactactagaa |
702266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 717764 - 717568
Alignment:
| Q |
18 |
caattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
717764 |
caattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatcctggtgtaatcacaattgctaatgctgtatttggatctaatc |
717665 |
T |
|
| Q |
118 |
caaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgggtggacaacaactagaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
717664 |
caaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggacaatcttcaaaaacaattctgggtggacaacaactagaa |
717568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 216
Target Start/End: Original strand, 716850 - 717029
Alignment:
| Q |
34 |
atggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcaga |
133 |
Q |
| |
|
|||||||||| |||| ||| ||||||||| |||||| ||| || | || ||||| ||| ||| | |||||||| ||||||| |||| |||||||| |
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| T |
716850 |
atggaaatgcggttgtcatttctggacttaacagccataattcaagagttatcactattattaaggaggtatttgggtctaatc---aaatttcttcaga |
716946 |
T |
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| Q |
134 |
agttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgggtggacaacaactagaatt |
216 |
Q |
| |
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| |||||||||| ||| ||||||| |||||||| ||||||||||||||||| |||||||||||| |||||||||| ||||||| |
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| T |
716947 |
acttctcaccaaggctcttcaagtggacaataacatagttgacaatcttcagaaacaattctggttggacaacaattagaatt |
717029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 20357888 - 20357809
Alignment:
| Q |
22 |
tgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgct |
101 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| || ||||| |||| |||||| |
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| T |
20357888 |
tgaatgtgggatatggcaatgccgttgctattgctggacttagcagtcaaaatccaggagttatcaccgttgcaaatgct |
20357809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 20353967 - 20354033
Alignment:
| Q |
22 |
tgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcac |
88 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
20353967 |
tgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaatccaggagtaatcac |
20354033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 197
Target Start/End: Original strand, 35313692 - 35313843
Alignment:
| Q |
46 |
ttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaa |
145 |
Q |
| |
|
|||| |||||||| ||||| |||||||| || || || || || ||||| |||||||| ||||||||||| ||| ||| |||| |||||||||||||| |
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|
| T |
35313692 |
ttgccattgctggtcttagtagccaaaaccctggagtgattaccattgcaaatgctgtgtttggatctaaaccaccaatttctttggaagttctcaccaa |
35313791 |
T |
|
| Q |
146 |
agcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgg |
197 |
Q |
| |
|
||| |||||||| || || ||| || | ||| |||||||||| ||||||||| |
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|
| T |
35313792 |
agcctttcaagtggataaaaatgtaatcgactatcttcaaaagcaattctgg |
35313843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 5278521 - 5278442
Alignment:
| Q |
22 |
tgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgct |
101 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||||||||||||| ||||||||||| || ||||| |||| |||||| |
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|
| T |
5278521 |
tgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaatccaggagttatcactgttgcaaatgct |
5278442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 5286502 - 5286423
Alignment:
| Q |
22 |
tgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgct |
101 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||||||||||||| ||||||||||| || ||||| |||| |||||| |
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|
| T |
5286502 |
tgaatgtgggatatggcaacgccgttgctattgctggacttagcagtcaaaatccaggagttatcactgttgcaaatgct |
5286423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 5282575 - 5282641
Alignment:
| Q |
22 |
tgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcac |
88 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||||||||||||| ||||| ||||| || ||||| |
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|
| T |
5282575 |
tgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagttatcac |
5282641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 6235472 - 6235378
Alignment:
| Q |
24 |
aatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatcc |
118 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||||||||| ||||| ||||| || ||||| |||| |||||| | ||| ||||||||| |
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|
| T |
6235472 |
aatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagttatcaccgttgcaaatgctttgtttaaatctaatcc |
6235378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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