View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11430_low_18 (Length: 264)
Name: NF11430_low_18
Description: NF11430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11430_low_18 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 6967464 - 6967708
Alignment:
| Q |
20 |
agagagcattaattcnnnnnnngacaaatatgtatgtaagaaaactacattaaaggaatttttcgaaaaatataaagttgctttacatgataacattttt |
119 |
Q |
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| T |
6967464 |
agagagcattaattctttttttgacaaatatgtatgtaagaaaactacattaaaggaatttgtcgaaaaatataaagttgctttacatgataacattttt |
6967563 |
T |
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| Q |
120 |
cttgtagtgtatgtcttcaatagagttcaaaccgcttaaaaagacacacaaatgctagaaactagagatgtttacacagcaaaaatcatttttctcacgc |
219 |
Q |
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| T |
6967564 |
cttgtagtgtatgtcttcaatagagttcaaaccgcttaaaaagacacacaaatgctagaaactagagatgtttacacagcaaaaatcatttttctcacgc |
6967663 |
T |
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| Q |
220 |
caatttatttcttaaggtagtagcaaatacatatggcataatgca |
264 |
Q |
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| T |
6967664 |
caatttatttcttaaggtagtagcaaatacatatggcataatgca |
6967708 |
T |
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Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 56109031 - 56109122
Alignment:
| Q |
20 |
agagagcattaattcnnnnnnngacaaatatgtatgtaagaaaactacattaaaggaatttttcgaaaaatataaagttgctttacatgata |
111 |
Q |
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| T |
56109031 |
agagagcattaattctttttttgacaaatatgtatgtaagaaaactacattaaaggaatttgtcgaaaaatataaagttgctttacatgata |
56109122 |
T |
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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 26014798 - 26014889
Alignment:
| Q |
20 |
agagagcattaattcnnnnnnngacaaatatgtatgtaagaaaactacattaaaggaatttttcgaaaaatataaagttgctttacatgata |
111 |
Q |
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| T |
26014798 |
agagagcattaattctttttttgacaaatatgtatgtaagaaaacaacattaaaggaatttgtcgaaaaatataaagttgctttacatgata |
26014889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 29271 - 29210
Alignment:
| Q |
42 |
gacaaatatgtatgtaagaaaactacattaaaggaatttttcgaaaaatataaagttgcttt |
103 |
Q |
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| T |
29271 |
gacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgcttt |
29210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 276381 - 276320
Alignment:
| Q |
42 |
gacaaatatgtatgtaagaaaactacattaaaggaatttttcgaaaaatataaagttgcttt |
103 |
Q |
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| T |
276381 |
gacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgcttt |
276320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 26396986 - 26396925
Alignment:
| Q |
42 |
gacaaatatgtatgtaagaaaactacattaaaggaatttttcgaaaaatataaagttgcttt |
103 |
Q |
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| T |
26396986 |
gacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgcttt |
26396925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 19217305 - 19217249
Alignment:
| Q |
42 |
gacaaatatgtatgtaagaaaactacattaaaggaatttttcgaaaaatataaagtt |
98 |
Q |
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|||||||||||| |||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
19217305 |
gacaaatatgtaggtaagaaaactacattaaaggagtttaatgaaaaatatatagtt |
19217249 |
T |
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