View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11430_low_2 (Length: 568)
Name: NF11430_low_2
Description: NF11430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11430_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Original strand, 2516827 - 2517374
Alignment:
| Q |
1 |
ccgaaaaccattcttagtcttcttattcctcgcctaatttgtccaacatagaaagggaaccaatagattatgtggtgttgttaattttaattgaagccac |
100 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2516827 |
ccgaaaaccatttttagtcttcttattcctcgcctcatttgtccaacatagaaagggaaccaatagattatgtggtgttgttacttttaattgaagccac |
2516926 |
T |
|
| Q |
101 |
ctcattatcttttgacacaccttcgccaccacttcacaatgcnnnnnnnggtgtagagccgtttcctccatcctcccacaaaacacacaactcttcgatg |
200 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2516927 |
ctcattatcttttgccacaccttcgccaccacttcacaatgcaaaaaaaggtgtagaattgtttcctccatcctcccacaaaacacacaactcttcgatg |
2517026 |
T |
|
| Q |
201 |
catccgcgttcaaaactccttgaatataatagctagattcacccttgtcggaatgcggtcaagtaacaatgtccaagcaaatgctagccctttagacgga |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
2517027 |
catccgcgttcaaaactccttgaata-----gctagattcaccctcgtcggaatgcggtcaagtaacaatgtccaagcgaatgctagccctttaaacgga |
2517121 |
T |
|
| Q |
301 |
gccccactcttccgaaggccaccaaacacaagctcctcgtctttggataaattaccatccaacaaaaacaacctctcaagtttcttgtaactagaattca |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| |
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| T |
2517122 |
gccccactcttccgaaggccaccaaacacaagctcctcgtcttcggataaattaccatccaacaaatacaacctctcaggttgcttgtaactagaattca |
2517221 |
T |
|
| Q |
401 |
ctgagaaacataccctccggctcccacccccactcgtctctcccttcacctatcactatcccctccaacaataccaccaagttacccactagctccgttt |
500 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2517222 |
ctgagaaacataccctccagcctccacccccactcgtctctctcttcacctatcactatcccctccaacattaccaccaagttacccactagctccgttt |
2517321 |
T |
|
| Q |
501 |
cccacacaaagagatatctacgccacccaaaatttcacctcccattctcctct |
553 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |
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| T |
2517322 |
cccacacaaagagatctctacgccacccgaaatttcaactcccattctcctct |
2517374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 158 - 543
Target Start/End: Complemental strand, 21018874 - 21018491
Alignment:
| Q |
158 |
gccgtttcctccatcctcccacaaaacacacaactcttcgatgcatccgcgttcaaaactccttgaatataatagctagattcacccttgtcggaatgcg |
257 |
Q |
| |
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||||||||||||| ||| ||| |||| |||||| |||| ||||||||||| |||||||| || |||| ||||||||||||||| |||| || || |
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| T |
21018874 |
gccgtttcctccaaccttccaaaaaaaacacaagtctttgatgcatccgcattcaaaacacccc-----taatcgctagattcacccttatcggtatacg |
21018780 |
T |
|
| Q |
258 |
gtcaagtaacaatgtccaagcaaatgctagccctttagacggagccccactcttccgaaggccaccaaacacaagctcctcgtctttggataaattacca |
357 |
Q |
| |
|
|||||||||||| ||||||||||| |||| | |||||||||| ||| || | ||| ||| ||||||||||| ||||||| |||| |||||||||| || |
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| T |
21018779 |
gtcaagtaacaaagtccaagcaaaagctaacactttagacggcacccgacacctccaaagatcaccaaacacacgctcctcatcttcggataaattaaca |
21018680 |
T |
|
| Q |
358 |
tccaacaaaaacaacctctcaagtttcttgtaactagaattcactgagaaacat----accctccggctcccacccccactcgtctctcccttcacctat |
453 |
Q |
| |
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|| | |||||||| ||||||||| ||| |||| || ||||| |||||| | |||||||| |||||||||||| ||||||||||| || | |
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| T |
21018679 |
tcgatcaaaaacagcctctcaagaagcttataacacgagttcaccgagaaaactctccctcctccggcctccacccccactc-tctctcccttcccccac |
21018581 |
T |
|
| Q |
454 |
cactatcccctccaacaataccaccaagttacccactagctccgtttcccacacaaagagatatctacgccacccaaaatttcacctccc |
543 |
Q |
| |
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|| | ||| |||||||| || ||||||| |||| |||||||||||||||||||| || | ||| |||||| | ||||| |||||||| |
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| T |
21018580 |
caacaccccttccaacaaaccccccaagttctccacaagctccgtttcccacacaaataggtctcttcgccacaccaaattccacctccc |
21018491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 226 - 354
Target Start/End: Complemental strand, 16744234 - 16744105
Alignment:
| Q |
226 |
ataatagctagattcacccttg-tcggaatgcggtcaagtaacaatgtccaagcaaatgctagccctttagacggagccccactcttccgaaggccacca |
324 |
Q |
| |
|
||||||||||| |||||||||| ||||||| |||||||||||||| || |||||||| |||| | ||||||||||||| | || ||||| ||| |||||| |
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| T |
16744234 |
ataatagctaggttcacccttgatcggaattcggtcaagtaacaacgttcaagcaaaagctaacactttagacggagcgcgacacttccaaagaccacca |
16744135 |
T |
|
| Q |
325 |
aacacaagctcctcgtctttggataaatta |
354 |
Q |
| |
|
|||||| |||||| ||| |||||||||| |
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|
| T |
16744134 |
aacacacactcctcatctccggataaatta |
16744105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 17192877 - 17192815
Alignment:
| Q |
158 |
gccgtttcctccatcctcccacaaaacacacaactcttcgatgcatccgcgttcaaaactcct |
220 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| | |||||||| ||||| ||||| |||||| |
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|
| T |
17192877 |
gccgtttcctccaccctcccacacaacacacaatttttcgatgcctccgcattcaacactcct |
17192815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 23293457 - 23293501
Alignment:
| Q |
163 |
ttcctccatcctcccacaaaacacacaactcttcgatgcatccgc |
207 |
Q |
| |
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||||||| |||| ||||| ||||||||| |||||||||||||||| |
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| T |
23293457 |
ttcctccctccttccacacaacacacaattcttcgatgcatccgc |
23293501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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